Analysis of interatomic Contacts of Structural Units in PDB entry:
5I04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I04 entry

There is 1 chain in PDB entry 5I04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54SER 728
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5I04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 87Right-handed alpha
Helix 2
AA2
A
97 107Right-handed alpha
Helix 3
AA3
A
121 128Right-handed alpha
Helix 4
AA4
A
137 142Right-handed alpha
Helix 5
AA5
A
145 152Right-handed alpha
Helix 6
AA6
A
186 197Right-handed alpha
Helix 7
AA7
A
208 219Right-handed alpha
Helix 8
AA8
A
240 256Right-handed alpha
Helix 9
AA9
A
264 274Right-handed alpha
Helix 10
AB1
A
283 285Right-handed 310
Helix 11
AB2
A
286 293Right-handed alpha
Helix 12
AB3
A
327 338Right-handed alpha
Helix 13
AB4
A
341 352Right-handed alpha
Helix 14
AB5
A
359 367Right-handed alpha
Helix 15
AB6
A
369 382Right-handed alpha
Helix 16
AB7
A
390 407Right-handed alpha
Helix 17
AB8
A
411 423Right-handed alpha
Helix 18
AB9
A
542 552Right-handed alpha
Helix 19
AC1
A
695 706Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5I04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
62 65parallel
Strand 3
A
114 118parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
161 166anti-parallel
Strand 6
A
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
62 65parallel
Strand 3
A
114 118parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
383 384parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
277 282parallel
Strand 3
A
169 173anti-parallel
Strand 4
A
297 300anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
230 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
605 608anti-parallel
Strand 3
A
710 718anti-parallel
Strand 4
A
617 624parallel
Strand 5
A
649 654parallel
Strand 6
A
670 673parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 446first strand
Strand 2
A
720 727anti-parallel
Strand 3
A
632 640parallel
Strand 4
A
659 665parallel
Strand 5
A
676 679parallel
Strand 6
A
687 688anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 537first strand
Strand 2
A
516 520parallel
Strand 3
A
494 501parallel
Strand 4
A
462 470parallel
Strand 5
A
556 563parallel
Strand 6
A
448 454anti-parallel
Strand 7
A
585 589anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
505 511parallel
Strand 3
A
476 483parallel
Strand 4
A
565 571parallel
Strand 5
A
594 598anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il