Analysis of interatomic Contacts of Structural Units in PDB entry:
5I9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5I9J entry

There is 1 chain in PDB entry 5I9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 231ARG 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5I9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 255Right-handed alpha
Helix 2
AA2
A
256 259Right-handed 310
Helix 3
AA3
A
292 301Right-handed alpha
Helix 4
AA4
A
303 311Right-handed alpha
Helix 5
AA5
A
415 444Right-handed alpha
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There are 3 sheets in PDB entry 5I9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
280 289anti-parallel
Strand 4
A
400 406anti-parallel
Strand 5
A
386 392anti-parallel
Strand 6
A
359 366anti-parallel
Strand 7
A
345 355anti-parallel
Strand 8
A
327 334anti-parallel
Strand 9
A
314 323anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
280 289anti-parallel
Strand 4
A
400 406anti-parallel
Strand 5
A
386 392anti-parallel
Strand 6
A
359 366anti-parallel
Strand 7
A
345 355anti-parallel
Strand 8
A
379 380parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
408 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il