Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IFE entry

There are 4 chains in PDB entry 5IFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 15	ALA 80
C	ASN 463	LEU 1304
D	ASP 7	LYS 95
A	VAL -1	ASP 1222

There are 80 helices in PDB entry 5IFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	46	Right-handed alpha
Helix 2	AA2	B	46	57	Right-handed alpha
Helix 3	AA3	B	60	71	Right-handed alpha
Helix 4	AA4	C	468	470	Right-handed 310
Helix 5	AA5	C	471	476	Right-handed alpha
Helix 6	AA6	C	477	479	Right-handed 310
Helix 7	AA7	C	491	499	Right-handed alpha
Helix 8	AA8	C	499	506	Right-handed alpha
Helix 9	AA9	C	508	522	Right-handed alpha
Helix 10	AB1	C	522	527	Right-handed alpha
Helix 11	AB2	C	527	541	Right-handed alpha
Helix 12	AB3	C	545	563	Right-handed alpha
Helix 13	AB4	C	567	569	Right-handed 310
Helix 14	AB5	C	570	579	Right-handed alpha
Helix 15	AB6	C	580	584	Right-handed 310
Helix 16	AB7	C	586	604	Right-handed alpha
Helix 17	AB8	C	605	614	Right-handed alpha
Helix 18	AB9	C	621	640	Right-handed alpha
Helix 19	AC1	C	640	652	Right-handed alpha
Helix 20	AC2	C	657	676	Right-handed alpha
Helix 21	AC3	C	677	681	Right-handed 310
Helix 22	AC4	C	682	691	Right-handed alpha
Helix 23	AC5	C	692	696	Right-handed 310
Helix 24	AC6	C	698	717	Right-handed alpha
Helix 25	AC7	C	721	723	Right-handed 310
Helix 26	AC8	C	724	738	Right-handed alpha
Helix 27	AC9	C	740	754	Right-handed alpha
Helix 28	AD1	C	755	757	Right-handed 310
Helix 29	AD2	C	758	776	Right-handed alpha
Helix 30	AD3	C	777	779	Right-handed 310
Helix 31	AD4	C	781	796	Right-handed alpha
Helix 32	AD5	C	802	810	Right-handed alpha
Helix 33	AD6	C	810	818	Right-handed alpha
Helix 34	AD7	C	820	824	Right-handed 310
Helix 35	AD8	C	826	845	Right-handed alpha
Helix 36	AD9	C	845	855	Right-handed alpha
Helix 37	AE1	C	856	859	Right-handed 310
Helix 38	AE2	C	861	880	Right-handed alpha
Helix 39	AE3	C	885	902	Right-handed alpha
Helix 40	AE4	C	907	922	Right-handed alpha
Helix 41	AE5	C	923	927	Right-handed 310
Helix 42	AE6	C	928	941	Right-handed alpha
Helix 43	AE7	C	947	964	Right-handed alpha
Helix 44	AE8	C	967	980	Right-handed alpha
Helix 45	AE9	C	986	1002	Right-handed alpha
Helix 46	AF1	C	1012	1021	Right-handed alpha
Helix 47	AF2	C	1022	1026	Right-handed 310
Helix 48	AF3	C	1028	1046	Right-handed alpha
Helix 49	AF4	C	1047	1050	Right-handed 310
Helix 50	AF5	C	1051	1063	Right-handed alpha
Helix 51	AF6	C	1064	1068	Right-handed 310
Helix 52	AF7	C	1070	1089	Right-handed alpha
Helix 53	AF8	C	1108	1123	Right-handed alpha
Helix 54	AF9	C	1128	1135	Right-handed alpha
Helix 55	AG1	C	1140	1159	Right-handed alpha
Helix 56	AG2	C	1160	1164	Right-handed 310
Helix 57	AG3	C	1165	1178	Right-handed alpha
Helix 58	AG4	C	1181	1200	Right-handed alpha
Helix 59	AG5	C	1204	1216	Right-handed alpha
Helix 60	AG6	C	1217	1220	Right-handed 310
Helix 61	AG7	C	1223	1242	Right-handed alpha
Helix 62	AG8	C	1242	1251	Right-handed alpha
Helix 63	AG9	C	1252	1255	Right-handed 310
Helix 64	AH1	C	1258	1275	Right-handed alpha
Helix 65	AH2	C	1279	1283	Right-handed 310
Helix 66	AH3	C	1298	1302	Right-handed 310
Helix 67	AH4	D	51	55	Right-handed 310
Helix 68	AH5	D	73	78	Right-handed alpha
Helix 69	AH6	D	79	83	Right-handed 310
Helix 70	AH7	A	429	432	Right-handed 310
Helix 71	AH8	A	620	624	Right-handed 310
Helix 72	AH9	A	808	825	Right-handed alpha
Helix 73	AI1	A	838	843	Right-handed alpha
Helix 74	AI2	A	930	935	Right-handed alpha
Helix 75	AI3	A	1134	1152	Right-handed alpha
Helix 76	AI4	A	1159	1165	Right-handed alpha
Helix 77	AI5	A	1176	1180	Right-handed alpha
Helix 78	AI6	A	1181	1185	Right-handed 310
Helix 79	AI7	A	1186	1197	Right-handed alpha
Helix 80	AI8	A	1200	1216	Right-handed alpha

There are 27 sheets in PDB entry 5IFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	88	90	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	44	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	67	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	70	72	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1101	1108	first strand
Strand 2	A	1115	1121	anti-parallel
Strand 3	A	1126	1129	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	A	1173	1175	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	37	43	anti-parallel
Strand 4	A	50	57	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	98	106	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	152	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	158	159	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	173	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	219	227	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	247	252	anti-parallel
Strand 3	A	255	258	anti-parallel
Strand 4	A	267	270	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	386	387	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	294	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	309	318	anti-parallel
Strand 4	A	321	332	anti-parallel
Strand 5	A	372	374	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	342	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	356	361	anti-parallel
Strand 4	A	395	401	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	413	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	434	441	anti-parallel
Strand 4	A	773	780	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	761	766	anti-parallel
Strand 3	A	753	758	anti-parallel
Strand 4	A	741	745	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	462	first strand
Strand 2	A	473	477	anti-parallel
Strand 3	A	482	486	anti-parallel
Strand 4	A	492	493	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	516	520	anti-parallel
Strand 3	A	523	527	anti-parallel
Strand 4	A	533	537	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	549	first strand
Strand 2	A	553	558	anti-parallel
Strand 3	A	562	568	anti-parallel
Strand 4	A	574	576	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	549	first strand
Strand 2	A	553	558	anti-parallel
Strand 3	A	562	568	anti-parallel
Strand 4	A	581	582	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	592	first strand
Strand 2	A	604	609	anti-parallel
Strand 3	A	613	618	anti-parallel
Strand 4	A	626	632	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	643	first strand
Strand 2	A	663	669	anti-parallel
Strand 3	A	673	679	anti-parallel
Strand 4	A	686	690	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	706	first strand
Strand 2	A	709	715	anti-parallel
Strand 3	A	719	724	anti-parallel
Strand 4	A	729	733	anti-parallel
Strand 5	A	1220	1221	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	790	first strand
Strand 2	A	797	804	anti-parallel
Strand 3	A	862	869	anti-parallel
Strand 4	A	876	881	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	894	first strand
Strand 2	A	904	911	anti-parallel
Strand 3	A	922	928	anti-parallel
Strand 4	A	939	945	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	949	955	first strand
Strand 2	A	958	963	anti-parallel
Strand 3	A	966	971	anti-parallel
Strand 4	A	978	983	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	994	first strand
Strand 2	A	999	1004	anti-parallel
Strand 3	A	1009	1015	anti-parallel
Strand 4	A	1020	1027	anti-parallel
Strand 5	A	1088	1096	parallel
Strand 6	A	1052	1057	anti-parallel
Strand 7	A	1043	1048	anti-parallel
Strand 8	A	1033	1038	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IFE