Analysis of interatomic Contacts of Structural Units in PDB entry:
5IJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IJ9 entry

There are 2 chains in PDB entry 5IJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1GLN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5IJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
143 162Right-handed alpha
Helix 9
AA9
A
182 196Right-handed alpha
Helix 10
AB1
A
205 218Right-handed alpha
Helix 11
AB2
A
223 244Right-handed alpha
Helix 12
AB3
A
251 260Right-handed alpha
Helix 13
AB4
A
279 284Right-handed alpha
Helix 14
AB5
A
287 296Right-handed alpha
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
306 310Right-handed 310
Helix 17
AB8
A
324 338Right-handed alpha
Helix 18
AB9
A
382 401Right-handed alpha
Helix 19
AC1
A
404 411Right-handed alpha
Helix 20
AC2
A
414 437Right-handed alpha
Helix 21
AC3
B
11 28Right-handed alpha
Helix 22
AC4
B
40 45Right-handed alpha
Helix 23
AC5
B
46 49Right-handed 310
Helix 24
AC6
B
69 79Right-handed alpha
Helix 25
AC7
B
80 84Right-handed 310
Helix 26
AC8
B
86 88Right-handed 310
Helix 27
AC9
B
100 107Right-handed alpha
Helix 28
AD1
B
109 126Right-handed alpha
Helix 29
AD2
B
141 159Right-handed alpha
Helix 30
AD3
B
180 196Right-handed alpha
Helix 31
AD4
B
203 214Right-handed alpha
Helix 32
AD5
B
221 242Right-handed alpha
Helix 33
AD6
B
249 258Right-handed alpha
Helix 34
AD7
B
278 282Right-handed 310
Helix 35
AD8
B
285 294Right-handed alpha
Helix 36
AD9
B
295 299Right-handed 310
Helix 37
AE1
B
322 337Right-handed alpha
Helix 38
AE2
B
372 391Right-handed alpha
Helix 39
AE3
B
394 401Right-handed alpha
Helix 40
AE4
B
404 425Right-handed alpha
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There are 5 sheets in PDB entry 5IJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
351 355parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
2 8parallel
Strand 4
B
129 138parallel
Strand 5
B
163 169parallel
Strand 6
B
198 202parallel
Strand 7
B
265 271parallel
Strand 8
B
363 370anti-parallel
Strand 9
B
312 319anti-parallel
Strand 10
B
349 354parallel
Strand 11
B
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il