Analysis of interatomic Contacts of Structural Units in PDB entry:
5ISH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ISH entry

There are 2 chains in PDB entry 5ISH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 136	THR 478
B	SER 136	VAL 419

There are 60 helices in PDB entry 5ISH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	136	142	Right-handed alpha
Helix 2	AA2	A	143	155	Right-handed alpha
Helix 3	AA3	A	156	165	Right-handed alpha
Helix 4	AA4	A	166	179	Right-handed alpha
Helix 5	AA5	A	180	184	Right-handed 310
Helix 6	AA6	A	197	206	Right-handed alpha
Helix 7	AA7	A	218	230	Right-handed alpha
Helix 8	AA8	A	268	276	Right-handed alpha
Helix 9	AA9	A	300	312	Right-handed alpha
Helix 10	AB1	A	313	315	Right-handed 310
Helix 11	AB2	A	318	322	Right-handed 310
Helix 12	AB3	A	324	326	Right-handed 310
Helix 13	AB4	A	327	337	Right-handed alpha
Helix 14	AB5	A	345	349	Right-handed 310
Helix 15	AB6	A	364	368	Right-handed 310
Helix 16	AB7	B	137	142	Right-handed alpha
Helix 17	AB8	B	143	155	Right-handed alpha
Helix 18	AB9	B	156	165	Right-handed alpha
Helix 19	AC1	B	166	180	Right-handed alpha
Helix 20	AC2	B	181	184	Right-handed 310
Helix 21	AC3	B	197	206	Right-handed alpha
Helix 22	AC4	B	218	230	Right-handed alpha
Helix 23	AC5	B	268	276	Right-handed alpha
Helix 24	AC6	B	300	312	Right-handed alpha
Helix 25	AC7	B	313	316	Right-handed 310
Helix 26	AC8	B	318	322	Right-handed 310
Helix 27	AC9	B	324	326	Right-handed 310
Helix 28	AD1	B	327	337	Right-handed alpha
Helix 29	AD2	B	345	349	Right-handed 310
Helix 30	AD3	B	364	368	Right-handed 310
Helix 31	AD4	C	137	142	Right-handed alpha
Helix 32	AD5	C	143	155	Right-handed alpha
Helix 33	AD6	C	156	165	Right-handed alpha
Helix 34	AD7	C	166	180	Right-handed alpha
Helix 35	AD8	C	181	184	Right-handed 310
Helix 36	AD9	C	197	206	Right-handed alpha
Helix 37	AE1	C	218	230	Right-handed alpha
Helix 38	AE2	C	268	276	Right-handed alpha
Helix 39	AE3	C	300	312	Right-handed alpha
Helix 40	AE4	C	313	315	Right-handed 310
Helix 41	AE5	C	318	322	Right-handed 310
Helix 42	AE6	C	324	326	Right-handed 310
Helix 43	AE7	C	327	337	Right-handed alpha
Helix 44	AE8	C	345	349	Right-handed 310
Helix 45	AE9	C	364	368	Right-handed 310
Helix 46	AF1	D	137	142	Right-handed alpha
Helix 47	AF2	D	143	155	Right-handed alpha
Helix 48	AF3	D	156	165	Right-handed alpha
Helix 49	AF4	D	166	180	Right-handed alpha
Helix 50	AF5	D	181	184	Right-handed 310
Helix 51	AF6	D	197	206	Right-handed alpha
Helix 52	AF7	D	218	230	Right-handed alpha
Helix 53	AF8	D	268	276	Right-handed alpha
Helix 54	AF9	D	300	312	Right-handed alpha
Helix 55	AG1	D	313	316	Right-handed 310
Helix 56	AG2	D	318	322	Right-handed 310
Helix 57	AG3	D	324	326	Right-handed 310
Helix 58	AG4	D	327	337	Right-handed alpha
Helix 59	AG5	D	345	349	Right-handed 310
Helix 60	AG6	D	364	368	Right-handed 310

There are 16 sheets in PDB entry 5ISH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	210	215	parallel
Strand 3	A	188	192	parallel
Strand 4	A	252	257	parallel
Strand 5	A	280	287	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	402	406	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	418	429	anti-parallel
Strand 5	A	340	342	anti-parallel
Strand 6	A	474	475	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	378	first strand
Strand 2	A	434	444	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	463	469	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	210	215	parallel
Strand 3	B	188	192	parallel
Strand 4	B	252	257	parallel
Strand 5	B	280	287	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	402	406	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	418	429	anti-parallel
Strand 5	B	340	342	anti-parallel
Strand 6	B	474	475	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	378	first strand
Strand 2	B	434	444	anti-parallel
Strand 3	B	448	457	anti-parallel
Strand 4	B	463	469	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	210	215	parallel
Strand 3	C	188	192	parallel
Strand 4	C	252	257	parallel
Strand 5	C	280	287	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	402	406	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	418	429	anti-parallel
Strand 5	C	340	342	anti-parallel
Strand 6	C	474	475	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	378	first strand
Strand 2	C	434	444	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	463	469	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	210	215	parallel
Strand 3	D	188	192	parallel
Strand 4	D	252	257	parallel
Strand 5	D	280	287	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	402	406	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	418	429	anti-parallel
Strand 5	D	340	342	anti-parallel
Strand 6	D	474	475	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	378	first strand
Strand 2	D	434	443	anti-parallel
Strand 3	D	449	457	anti-parallel
Strand 4	D	463	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ISH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ISH