Analysis of interatomic Contacts of Structural Units in PDB entry:
5IVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IVI entry

There is 1 chain in PDB entry 5IVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 5PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5IVI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
6 27Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
152 156Right-handed 310
Helix 4
AA4
A
167 173Right-handed alpha
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
185 202Right-handed alpha
Helix 7
AA7
A
203 205Right-handed 310
Helix 8
AA8
A
218 230Right-handed alpha
Helix 9
AA9
A
231 234Right-handed 310
Helix 10
AB1
A
258 267Right-handed alpha
Helix 11
AB2
A
274 284Right-handed alpha
Helix 12
AB3
A
286 294Right-handed alpha
Helix 13
AB4
A
295 297Right-handed 310
Helix 14
AB5
A
299 305Right-handed alpha
Helix 15
AB6
A
328 334Right-handed alpha
Helix 16
AB7
A
335 341Right-handed 310
Helix 17
AB8
A
351 354Right-handed 310
Helix 18
AB9
A
355 362Right-handed alpha
Helix 19
AC1
A
363 371Right-handed 310
Helix 20
AC2
A
372 376Right-handed 310
Helix 21
AC3
A
387 402Right-handed alpha
Helix 22
AC4
A
408 421Right-handed alpha
Helix 23
AC5
A
421 434Right-handed alpha
Helix 24
AC6
A
455 461Right-handed alpha
Helix 25
AC7
A
472 478Right-handed 310
Helix 26
AC8
A
491 511Right-handed alpha
Helix 27
AC9
A
552 561Right-handed alpha
Helix 28
AD1
A
562 564Right-handed 310
Helix 29
AD2
A
566 570Right-handed 310
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There are 3 sheets in PDB entry 5IVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 37first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
85 87parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 37first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
54 62anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
159 163anti-parallel
Strand 6
A
127 133parallel
Strand 7
A
207 217parallel
Strand 8
A
239 243parallel
Strand 9
A
343 348parallel
Strand 10
A
441 446parallel
Strand 11
A
537 541parallel
Strand 12
A
545 549anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 98first strand
Strand 2
A
105 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il