Analysis of interatomic Contacts of Structural Units in PDB entry:
5J11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J11 entry

There are 3 chains in PDB entry 5J11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 28GLN 159
B
ASP 37ASN 232
C
GLY 29CYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5J11. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
46 56Right-handed alpha
Helix 4
AA4
A
59 63Right-handed 310
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
96 110Right-handed alpha
Helix 7
AA7
A
136 152Right-handed alpha
Helix 8
AA8
B
122 126Right-handed 310
Helix 9
AA9
B
152 157Right-handed 310
Helix 10
AB1
B
193 195Right-handed 310
Helix 11
AB2
C
48 52Right-handed 310
Helix 12
AB3
C
190 195Right-handed alpha
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There are 8 sheets in PDB entry 5J11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
40 49first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
86 88anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
82 84first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
114 121anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 140first strand
Strand 2
B
145 151anti-parallel
Strand 3
B
187 191anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 183first strand
Strand 2
B
163 171anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
B
224 227anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
74 77first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
117 118parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 70first strand
Strand 2
C
57 61anti-parallel
Strand 3
C
94 101anti-parallel
Strand 4
C
104 112anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 129first strand
Strand 2
C
133 137anti-parallel
Strand 3
C
169 173anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
161 165first strand
Strand 2
C
146 153anti-parallel
Strand 3
C
181 189anti-parallel
Strand 4
C
207 210anti-parallel
Strand 5
C
213 215anti-parallel
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