Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1T entry

There are 3 chains in PDB entry 5J1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 54ASP 330
B
 ASN 236PHE 470
C
 VAL 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5J1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
72 88Right-handed alpha
Helix 3
AA3
A
107 120Right-handed alpha
Helix 4
AA4
A
122 126Right-handed 310
Helix 5
AA5
A
134 138Right-handed alpha
Helix 6
AA6
A
140 142Right-handed 310
Helix 7
AA7
A
143 162Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
210 224Right-handed alpha
Helix 11
AB2
A
227 231Right-handed 310
Helix 12
AB3
A
232 241Right-handed alpha
Helix 13
AB4
A
246 253Right-handed alpha
Helix 14
AB5
A
273 288Right-handed alpha
Helix 15
AB6
A
293 301Right-handed alpha
Helix 16
AB7
A
321 328Right-handed 310
Helix 17
AB8
B
241 245Right-handed 310
Helix 18
AB9
B
249 266Right-handed alpha
Helix 19
AC1
B
270 286Right-handed alpha
Helix 20
AC2
B
304 319Right-handed alpha
Helix 21
AC3
B
339 357Right-handed alpha
Helix 22
AC4
B
366 370Right-handed 310
Helix 23
AC5
B
371 375Right-handed 310
Helix 24
AC6
B
376 383Right-handed alpha
Helix 25
AC7
B
410 427Right-handed alpha
Helix 26
AC8
B
439 451Right-handed alpha
Helix 27
AC9
B
460 467Right-handed alpha
Helix 28
AD1
C
62 65Right-handed 310
Helix 29
AD2
C
87 91Right-handed 310
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There are 6 sheets in PDB entry 5J1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
166 170parallel
Strand 3
A
202 207parallel
Strand 4
A
96 102parallel
Strand 5
A
265 269parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
313 314anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
361 365parallel
Strand 3
B
393 399parallel
Strand 4
B
294 300parallel
Strand 5
B
454 457parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
117 122parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
117 122parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
110 113anti-parallel
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