Analysis of interatomic Contacts of Structural Units in PDB entry:
5J2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J2Q entry

There are 5 chains in PDB entry 5J2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1LYS 558
B
PRO 4GLU 430
P
G 805 G 816
P
C 818 C 821
T
A 705 G 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5J2Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 44Right-handed alpha
Helix 2
AA2
A
77 84Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
121 127Right-handed 310
Helix 6
AA6
A
155 175Right-handed alpha
Helix 7
AA7
A
194 212Right-handed alpha
Helix 8
AA8
A
217 219Right-handed 310
Helix 9
AA9
A
253 268Right-handed alpha
Helix 10
AB1
A
276 282Right-handed alpha
Helix 11
AB2
A
296 312Right-handed alpha
Helix 12
AB3
A
363 384Right-handed alpha
Helix 13
AB4
A
394 405Right-handed alpha
Helix 14
AB5
A
473 488Right-handed alpha
Helix 15
AB6
A
499 508Right-handed alpha
Helix 16
AB7
A
515 528Right-handed alpha
Helix 17
AB8
A
544 554Right-handed alpha
Helix 18
AB9
B
27 44Right-handed alpha
Helix 19
AC1
B
77 84Right-handed alpha
Helix 20
AC2
B
99 103Right-handed 310
Helix 21
AC3
B
112 118Right-handed 310
Helix 22
AC4
B
121 126Right-handed alpha
Helix 23
AC5
B
127 129Right-handed 310
Helix 24
AC6
B
134 138Right-handed 310
Helix 25
AC7
B
154 160Right-handed alpha
Helix 26
AC8
B
160 175Right-handed alpha
Helix 27
AC9
B
196 210Right-handed alpha
Helix 28
AD1
B
235 239Right-handed 310
Helix 29
AD2
B
254 268Right-handed alpha
Helix 30
AD3
B
276 281Right-handed alpha
Helix 31
AD4
B
282 284Right-handed 310
Helix 32
AD5
B
296 312Right-handed alpha
Helix 33
AD6
B
363 383Right-handed alpha
Helix 34
AD7
B
394 406Right-handed alpha
Helix 35
AD8
B
422 427Right-handed alpha
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There are 12 sheets in PDB entry 5J2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
129 130anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 64first strand
Strand 2
A
71 75anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
179 183first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
105 110anti-parallel
Strand 4
A
221 222anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 354first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 332anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
464 469first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
438 446anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 50first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 110first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
179 183anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
252 253first strand
Strand 2
B
292 293anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
348 354first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
325 333anti-parallel
Strand 4
B
387 391parallel
Strand 5
B
414 416parallel
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