Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3S entry

There is 1 chain in PDB entry 5J3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 112ASP 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5J3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 144Right-handed alpha
Helix 2
AA2
A
154 165Right-handed alpha
Helix 3
AA3
A
233 249Right-handed alpha
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
A
283 287Right-handed alpha
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There are 3 sheets in PDB entry 5J3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
179 185anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
114 120parallel
Strand 5
A
351 357anti-parallel
Strand 6
A
328 335anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 198first strand
Strand 2
A
207 215anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
316 320anti-parallel
Strand 6
A
281 282anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
312 313anti-parallel
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