Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J7U entry

There are 3 chains in PDB entry 5J7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 12ILE 620
B
LYS 6SER 621
C
PHE 5ARG 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are220 helices in PDB entry 5J7U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
46 52Right-handed alpha
Helix 4
AA4
A
179 184Right-handed alpha
Helix 5
AA5
A
202 212Right-handed alpha
Helix 6
AA6
A
217 225Right-handed alpha
Helix 7
AA7
A
247 251Right-handed 310
Helix 8
AA8
A
300 308Right-handed 310
Helix 9
AA9
A
327 330Right-handed 310
Helix 10
AB1
A
401 412Right-handed alpha
Helix 11
AB2
A
454 457Right-handed 310
Helix 12
AB3
A
462 467Right-handed alpha
Helix 13
AB4
A
541 546Right-handed alpha
Helix 14
AB5
A
546 552Right-handed alpha
Helix 15
AB6
A
553 557Right-handed 310
Helix 16
AB7
A
584 589Right-handed alpha
Helix 17
AB8
B
11 19Right-handed alpha
Helix 18
AB9
B
20 39Right-handed alpha
Helix 19
AC1
B
46 52Right-handed alpha
Helix 20
AC2
B
179 184Right-handed alpha
Helix 21
AC3
B
202 212Right-handed alpha
Helix 22
AC4
B
214 216Right-handed 310
Helix 23
AC5
B
217 225Right-handed alpha
Helix 24
AC6
B
247 251Right-handed 310
Helix 25
AC7
B
300 308Right-handed 310
Helix 26
AC8
B
327 330Right-handed 310
Helix 27
AC9
B
401 412Right-handed alpha
Helix 28
AD1
B
454 457Right-handed 310
Helix 29
AD2
B
462 467Right-handed alpha
Helix 30
AD3
B
541 546Right-handed alpha
Helix 31
AD4
B
546 552Right-handed alpha
Helix 32
AD5
B
553 557Right-handed 310
Helix 33
AD6
B
584 589Right-handed alpha
Helix 34
AD7
C
11 19Right-handed alpha
Helix 35
AD8
C
20 38Right-handed alpha
Helix 36
AD9
C
46 52Right-handed alpha
Helix 37
AE1
C
179 184Right-handed alpha
Helix 38
AE2
C
202 212Right-handed alpha
Helix 39
AE3
C
214 216Right-handed 310
Helix 40
AE4
C
217 225Right-handed alpha
Helix 41
AE5
C
247 251Right-handed 310
Helix 42
AE6
C
300 308Right-handed 310
Helix 43
AE7
C
312 314Right-handed 310
Helix 44
AE8
C
315 317Right-handed 310
Helix 45
AE9
C
327 330Right-handed 310
Helix 46
AF1
C
401 413Right-handed alpha
Helix 47
AF2
C
454 457Right-handed 310
Helix 48
AF3
C
462 467Right-handed alpha
Helix 49
AF4
C
541 546Right-handed alpha
Helix 50
AF5
C
546 552Right-handed alpha
Helix 51
AF6
C
553 557Right-handed 310
Helix 52
AF7
C
584 590Right-handed alpha
Helix 53
AF8
D
13 19Right-handed alpha
Helix 54
AF9
D
20 38Right-handed alpha
Helix 55
AG1
D
46 51Right-handed alpha
Helix 56
AG2
D
179 184Right-handed alpha
Helix 57
AG3
D
202 212Right-handed alpha
Helix 58
AG4
D
214 216Right-handed 310
Helix 59
AG5
D
217 225Right-handed alpha
Helix 60
AG6
D
247 251Right-handed 310
Helix 61
AG7
D
300 308Right-handed 310
Helix 62
AG8
D
312 314Right-handed 310
Helix 63
AG9
D
327 330Right-handed 310
Helix 64
AH1
D
401 413Right-handed alpha
Helix 65
AH2
D
454 457Right-handed 310
Helix 66
AH3
D
462 467Right-handed alpha
Helix 67
AH4
D
541 546Right-handed alpha
Helix 68
AH5
D
546 552Right-handed alpha
Helix 69
AH6
D
553 557Right-handed 310
Helix 70
AH7
D
584 590Right-handed alpha
Helix 71
AH8
E
11 20Right-handed alpha
Helix 72
AH9
E
20 39Right-handed alpha
Helix 73
AI1
E
46 51Right-handed alpha
Helix 74
AI2
E
179 184Right-handed alpha
Helix 75
AI3
E
202 212Right-handed alpha
Helix 76
AI4
E
214 216Right-handed 310
Helix 77
AI5
E
217 225Right-handed alpha
Helix 78
AI6
E
247 251Right-handed 310
Helix 79
AI7
E
300 308Right-handed 310
Helix 80
AI8
E
312 314Right-handed 310
Helix 81
AI9
E
327 330Right-handed 310
Helix 82
AJ1
E
401 412Right-handed alpha
Helix 83
AJ2
E
454 457Right-handed 310
Helix 84
AJ3
E
462 467Right-handed alpha
Helix 85
AJ4
E
541 546Right-handed alpha
Helix 86
AJ5
E
546 552Right-handed alpha
Helix 87
AJ6
E
553 557Right-handed 310
Helix 88
AJ7
E
584 590Right-handed alpha
Helix 89
AJ8
F
13 19Right-handed alpha
Helix 90
AJ9
F
20 38Right-handed alpha
Helix 91
AK1
F
46 52Right-handed alpha
Helix 92
AK2
F
179 184Right-handed alpha
Helix 93
AK3
F
202 212Right-handed alpha
Helix 94
AK4
F
214 225Right-handed alpha
Helix 95
AK5
F
247 251Right-handed 310
Helix 96
AK6
F
300 308Right-handed 310
Helix 97
AK7
F
312 314Right-handed 310
Helix 98
AK8
F
327 330Right-handed 310
Helix 99
AK9
F
401 410Right-handed alpha
Helix 100
AL1
F
454 457Right-handed 310
Helix 101
AL2
F
462 467Right-handed alpha
Helix 102
AL3
F
541 546Right-handed alpha
Helix 103
AL4
F
546 552Right-handed alpha
Helix 104
AL5
F
553 557Right-handed 310
Helix 105
AL6
M
997 1008Right-handed alpha
Helix 106
AL7
N
997 1010Right-handed alpha
Helix 107
AL8
O
997 1009Right-handed alpha
Helix 108
AL9
P
997 1008Right-handed alpha
Helix 109
AM1
Q
997 1008Right-handed alpha
Helix 110
AM2
R
997 1007Right-handed alpha
Helix 111
AM3
G
12 19Right-handed alpha
Helix 112
AM4
G
20 38Right-handed alpha
Helix 113
AM5
G
46 52Right-handed alpha
Helix 114
AM6
G
179 184Right-handed alpha
Helix 115
AM7
G
202 212Right-handed alpha
Helix 116
AM8
G
217 225Right-handed alpha
Helix 117
AM9
G
247 251Right-handed 310
Helix 118
AN1
G
300 308Right-handed 310
Helix 119
AN2
G
327 330Right-handed 310
Helix 120
AN3
G
401 412Right-handed alpha
Helix 121
AN4
G
454 457Right-handed 310
Helix 122
AN5
G
462 467Right-handed alpha
Helix 123
AN6
G
541 546Right-handed alpha
Helix 124
AN7
G
546 552Right-handed alpha
Helix 125
AN8
G
553 557Right-handed 310
Helix 126
AN9
G
584 589Right-handed alpha
Helix 127
AO1
H
12 19Right-handed alpha
Helix 128
AO2
H
20 38Right-handed alpha
Helix 129
AO3
H
46 51Right-handed alpha
Helix 130
AO4
H
179 184Right-handed alpha
Helix 131
AO5
H
202 212Right-handed alpha
Helix 132
AO6
H
214 216Right-handed 310
Helix 133
AO7
H
217 226Right-handed alpha
Helix 134
AO8
H
247 251Right-handed 310
Helix 135
AO9
H
300 308Right-handed 310
Helix 136
AP1
H
327 330Right-handed 310
Helix 137
AP2
H
401 412Right-handed alpha
Helix 138
AP3
H
454 457Right-handed 310
Helix 139
AP4
H
462 467Right-handed alpha
Helix 140
AP5
H
541 546Right-handed alpha
Helix 141
AP6
H
546 552Right-handed alpha
Helix 142
AP7
H
553 557Right-handed 310
Helix 143
AP8
H
584 589Right-handed alpha
Helix 144
AP9
I
11 19Right-handed alpha
Helix 145
AQ1
I
20 38Right-handed alpha
Helix 146
AQ2
I
46 52Right-handed alpha
Helix 147
AQ3
I
179 184Right-handed alpha
Helix 148
AQ4
I
202 212Right-handed alpha
Helix 149
AQ5
I
214 216Right-handed 310
Helix 150
AQ6
I
217 225Right-handed alpha
Helix 151
AQ7
I
247 251Right-handed 310
Helix 152
AQ8
I
300 308Right-handed 310
Helix 153
AQ9
I
312 314Right-handed 310
Helix 154
AR1
I
327 330Right-handed 310
Helix 155
AR2
I
401 413Right-handed alpha
Helix 156
AR3
I
454 457Right-handed 310
Helix 157
AR4
I
462 467Right-handed alpha
Helix 158
AR5
I
541 546Right-handed alpha
Helix 159
AR6
I
546 552Right-handed alpha
Helix 160
AR7
I
553 557Right-handed 310
Helix 161
AR8
I
584 590Right-handed alpha
Helix 162
AR9
J
12 19Right-handed alpha
Helix 163
AS1
J
20 38Right-handed alpha
Helix 164
AS2
J
46 51Right-handed alpha
Helix 165
AS3
J
179 184Right-handed alpha
Helix 166
AS4
J
202 212Right-handed alpha
Helix 167
AS5
J
214 225Right-handed alpha
Helix 168
AS6
J
247 251Right-handed 310
Helix 169
AS7
J
300 308Right-handed 310
Helix 170
AS8
J
312 314Right-handed 310
Helix 171
AS9
J
327 330Right-handed 310
Helix 172
AT1
J
401 412Right-handed alpha
Helix 173
AT2
J
454 456Right-handed 310
Helix 174
AT3
J
462 467Right-handed alpha
Helix 175
AT4
J
541 546Right-handed alpha
Helix 176
AT5
J
546 552Right-handed alpha
Helix 177
AT6
J
553 557Right-handed 310
Helix 178
AT7
J
584 590Right-handed alpha
Helix 179
AT8
K
11 19Right-handed alpha
Helix 180
AT9
K
20 38Right-handed alpha
Helix 181
AU1
K
46 52Right-handed alpha
Helix 182
AU2
K
179 184Right-handed alpha
Helix 183
AU3
K
202 212Right-handed alpha
Helix 184
AU4
K
214 216Right-handed 310
Helix 185
AU5
K
217 225Right-handed alpha
Helix 186
AU6
K
247 251Right-handed 310
Helix 187
AU7
K
300 308Right-handed 310
Helix 188
AU8
K
312 314Right-handed 310
Helix 189
AU9
K
315 317Right-handed 310
Helix 190
AV1
K
327 330Right-handed 310
Helix 191
AV2
K
401 412Right-handed alpha
Helix 192
AV3
K
454 457Right-handed 310
Helix 193
AV4
K
462 467Right-handed alpha
Helix 194
AV5
K
541 546Right-handed alpha
Helix 195
AV6
K
546 552Right-handed alpha
Helix 196
AV7
K
553 557Right-handed 310
Helix 197
AV8
L
12 19Right-handed alpha
Helix 198
AV9
L
20 38Right-handed alpha
Helix 199
AW1
L
46 52Right-handed alpha
Helix 200
AW2
L
179 184Right-handed alpha
Helix 201
AW3
L
202 212Right-handed alpha
Helix 202
AW4
L
214 225Right-handed alpha