Analysis of interatomic Contacts of Structural Units in PDB entry:
5J97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J97 entry

There are 2 chains in PDB entry 5J97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 196PRO 320
B
GLN 199PRO 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 5J97. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
196 228Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
247 262Right-handed alpha
Helix 4
AA4
A
270 288Right-handed alpha
Helix 5
AA5
A
298 312Right-handed alpha
Helix 6
AA6
B
201 228Right-handed alpha
Helix 7
AA7
B
229 239Right-handed alpha
Helix 8
AA8
B
247 262Right-handed alpha
Helix 9
AA9
B
270 288Right-handed alpha
Helix 10
AB1
B
298 310Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5J97. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
292 293first strand
Strand 2
A
296 297anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
292 293first strand
Strand 2
B
296 297anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il