Analysis of interatomic Contacts of Structural Units in PDB entry:
5JA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JA4 entry

There are 4 chains in PDB entry 5JA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 57ARG 134
B
LYS 12PHE 100
C
ASP 68ALA 124
D
LYS 521SER 669
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5JA4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
85 114Right-handed alpha
Helix 3
AA3
A
120 131Right-handed alpha
Helix 4
AA4
B
24 29Right-handed 310
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
49 76Right-handed alpha
Helix 7
AA7
B
82 93Right-handed alpha
Helix 8
AA8
C
76 82Right-handed 310
Helix 9
AA9
C
106 123Right-handed alpha
Helix 10
AB1
D
531 540Right-handed alpha
Helix 11
AB2
D
541 552Right-handed alpha
Helix 12
AB3
D
564 573Right-handed alpha
Helix 13
AB4
D
574 584Right-handed alpha
Helix 14
AB5
D
600 608Right-handed alpha
Helix 15
AB6
D
610 617Right-handed alpha
Helix 16
AB7
D
633 645Right-handed alpha
Helix 17
AB8
D
650 669Right-handed alpha
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There are 2 sheets in PDB entry 5JA4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
Strand 3
C
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il