Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCY entry

There are 2 chains in PDB entry 5JCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1468VAL 1853
B
 ARG 404MET 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5JCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1478 1480Right-handed 310
Helix 2
AA2
A
1481 1490Right-handed alpha
Helix 3
AA3
A
1497 1502Right-handed alpha
Helix 4
AA4
A
1505 1521Right-handed alpha
Helix 5
AA5
A
1523 1546Right-handed alpha
Helix 6
AA6
A
1548 1569Right-handed alpha
Helix 7
AA7
A
1572 1576Right-handed 310
Helix 8
AA8
A
1580 1585Right-handed alpha
Helix 9
AA9
A
1593 1620Right-handed alpha
Helix 10
AB1
A
1622 1628Right-handed alpha
Helix 11
AB2
A
1658 1676Right-handed alpha
Helix 12
AB3
A
1679 1705Right-handed alpha
Helix 13
AB4
A
1710 1731Right-handed alpha
Helix 14
AB5
A
1738 1741Right-handed 310
Helix 15
AB6
A
1742 1754Right-handed alpha
Helix 16
AB7
A
1758 1769Right-handed alpha
Helix 17
AB8
A
1773 1784Right-handed alpha
Helix 18
AB9
A
1795 1806Right-handed alpha
Helix 19
AC1
A
1835 1839Right-handed 310
Helix 20
AC2
A
1842 1846Right-handed 310
Helix 21
AC3
B
413 418Right-handed alpha
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There are 2 sheets in PDB entry 5JCY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1474 1476first strand
Strand 2
A
1851 1853anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1591 1592first strand
Strand 2
B
407 408parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il