Analysis of interatomic Contacts of Structural Units in PDB entry:
5JKB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JKB entry

There are 4 chains in PDB entry 5JKB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 18	GLU 229
B	PRO 18	GLU 229
C	GLY 20	GLU 229
D	GLY 20	GLU 229

There are 40 helices in PDB entry 5JKB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed 310
Helix 2	AA2	A	44	51	Right-handed 310
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	83	100	Right-handed alpha
Helix 5	AA5	A	103	105	Right-handed 310
Helix 6	AA6	A	132	144	Right-handed alpha
Helix 7	AA7	A	175	179	Right-handed alpha
Helix 8	AA8	A	181	189	Right-handed alpha
Helix 9	AA9	A	212	216	Right-handed 310
Helix 10	AB1	A	219	229	Right-handed alpha
Helix 11	AB2	B	19	24	Right-handed 310
Helix 12	AB3	B	44	51	Right-handed 310
Helix 13	AB4	B	57	66	Right-handed alpha
Helix 14	AB5	B	83	100	Right-handed alpha
Helix 15	AB6	B	103	105	Right-handed 310
Helix 16	AB7	B	132	144	Right-handed alpha
Helix 17	AB8	B	175	179	Right-handed alpha
Helix 18	AB9	B	181	189	Right-handed alpha
Helix 19	AC1	B	212	216	Right-handed 310
Helix 20	AC2	B	219	227	Right-handed alpha
Helix 21	AC3	C	20	24	Right-handed 310
Helix 22	AC4	C	44	51	Right-handed 310
Helix 23	AC5	C	57	65	Right-handed alpha
Helix 24	AC6	C	83	100	Right-handed alpha
Helix 25	AC7	C	103	105	Right-handed 310
Helix 26	AC8	C	132	144	Right-handed alpha
Helix 27	AC9	C	175	179	Right-handed alpha
Helix 28	AD1	C	181	189	Right-handed alpha
Helix 29	AD2	C	212	216	Right-handed 310
Helix 30	AD3	C	219	229	Right-handed alpha
Helix 31	AD4	D	20	24	Right-handed 310
Helix 32	AD5	D	44	51	Right-handed 310
Helix 33	AD6	D	57	65	Right-handed alpha
Helix 34	AD7	D	83	100	Right-handed alpha
Helix 35	AD8	D	103	105	Right-handed 310
Helix 36	AD9	D	132	144	Right-handed alpha
Helix 37	AE1	D	175	179	Right-handed alpha
Helix 38	AE2	D	181	189	Right-handed alpha
Helix 39	AE3	D	212	216	Right-handed 310
Helix 40	AE4	D	219	229	Right-handed alpha

There are 12 sheets in PDB entry 5JKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	194	196	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	194	196	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	194	196	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	194	196	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	173	174	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JKB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JKB