Analysis of interatomic Contacts of Structural Units in PDB entry:
5JKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JKD entry

There are 2 chains in PDB entry 5JKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 18PRO 254
B
 PRO 18PHE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5JKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
46 48Right-handed 310
Helix 5
AA5
A
49 63Right-handed alpha
Helix 6
AA6
A
79 100Right-handed alpha
Helix 7
AA7
A
103 133Right-handed alpha
Helix 8
AA8
A
184 189Right-handed 310
Helix 9
AA9
A
224 228Right-handed 310
Helix 10
AB1
B
20 24Right-handed 310
Helix 11
AB2
B
44 51Right-handed 310
Helix 12
AB3
B
57 65Right-handed alpha
Helix 13
AB4
B
76 80Right-handed 310
Helix 14
AB5
B
83 100Right-handed alpha
Helix 15
AB6
B
103 105Right-handed 310
Helix 16
AB7
B
132 143Right-handed alpha
Helix 17
AB8
B
175 179Right-handed alpha
Helix 18
AB9
B
181 189Right-handed alpha
Helix 19
AC1
B
212 216Right-handed 310
Helix 20
AC2
B
219 228Right-handed alpha
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There are 6 sheets in PDB entry 5JKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
140 148anti-parallel
Strand 3
A
154 162anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
244 253parallel
Strand 3
A
229 237anti-parallel
Strand 4
A
193 201anti-parallel
Strand 5
A
207 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
217 220anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
125 126anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
194 196parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
173 174anti-parallel
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