Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JMO entry

There are 6 chains in PDB entry 5JMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 110LEU 578
B
ASP 108LEU 578
C
GLN 1VAL 115
D
GLN 1SER 117
G
ARG 2LYS 4
H
ARG 3LYS 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5JMO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
117 120Right-handed 310
Helix 2
AA2
A
121 126Right-handed alpha
Helix 3
AA3
A
133 140Right-handed alpha
Helix 4
AA4
A
163 167Right-handed 310
Helix 5
AA5
A
168 172Right-handed 310
Helix 6
AA6
A
193 204Right-handed alpha
Helix 7
AA7
A
232 241Right-handed alpha
Helix 8
AA8
A
267 281Right-handed alpha
Helix 9
AA9
A
282 285Right-handed 310
Helix 10
AB1
A
296 300Right-handed 310
Helix 11
AB2
A
302 306Right-handed 310
Helix 12
AB3
A
366 385Right-handed alpha
Helix 13
AB4
A
389 401Right-handed alpha
Helix 14
AB5
A
430 439Right-handed alpha
Helix 15
AB6
A
497 499Right-handed 310
Helix 16
AB7
B
117 121Right-handed 310
Helix 17
AB8
B
133 140Right-handed alpha
Helix 18
AB9
B
163 167Right-handed 310
Helix 19
AC1
B
168 172Right-handed 310
Helix 20
AC2
B
190 192Right-handed 310
Helix 21
AC3
B
193 204Right-handed alpha
Helix 22
AC4
B
232 241Right-handed alpha
Helix 23
AC5
B
267 281Right-handed alpha
Helix 24
AC6
B
282 285Right-handed 310
Helix 25
AC7
B
296 300Right-handed 310
Helix 26
AC8
B
302 306Right-handed 310
Helix 27
AC9
B
366 385Right-handed alpha
Helix 28
AD1
B
389 401Right-handed alpha
Helix 29
AD2
B
430 439Right-handed alpha
Helix 30
AD3
B
497 499Right-handed 310
Helix 31
AD4
C
28 32Right-handed 310
Helix 32
AD5
C
62 65Right-handed 310
Helix 33
AD6
C
87 91Right-handed 310
Helix 34
AD7
D
28 32Right-handed 310
Helix 35
AD8
D
87 91Right-handed 310
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There are 18 sheets in PDB entry 5JMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 174first strand
Strand 2
A
220 225parallel
Strand 3
A
148 153parallel
Strand 4
A
249 252parallel
Strand 5
A
288 292parallel
Strand 6
A
314 320parallel
Strand 7
A
338 341parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 255first strand
Strand 2
G
3 4anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
351 355first strand
Strand 2
A
359 364anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
412 413first strand
Strand 2
A
419 420anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
448 453first strand
Strand 2
A
561 573anti-parallel
Strand 3
A
459 460anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
448 453first strand
Strand 2
A
561 573anti-parallel
Strand 3
A
483 495anti-parallel
Strand 4
A
528 535anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
464 471first strand
Strand 2
A
545 553anti-parallel
Strand 3
A
501 506anti-parallel
Strand 4
A
512 516anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 174first strand
Strand 2
B
220 225parallel
Strand 3
B
148 153parallel
Strand 4
B
249 252parallel
Strand 5
B
288 292parallel
Strand 6
B
314 320parallel
Strand 7
B
338 341parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 255first strand
Strand 2
H
4 5anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
351 355first strand
Strand 2
B
359 364anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
412 413first strand
Strand 2
B
419 420anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
448 453first strand
Strand 2
B
561 573anti-parallel
Strand 3
B
459 460anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
448 453first strand
Strand 2
B
561 573anti-parallel
Strand 3
B
483 495anti-parallel
Strand 4
B
528 535anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
464 471first strand
Strand 2
B
545 553anti-parallel
Strand 3
B
501 506anti-parallel
Strand 4
B
512 516anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 60first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 97anti-parallel
Strand 5
C
111 113anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
111 115parallel
Strand 3
D
92 97anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
58 60anti-parallel
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