Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JNO entry

There are 2 chains in PDB entry 5JNO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 236ASP 347
B
ALA 10ALA 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5JNO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
243 247Right-handed 310
Helix 2
AA2
A
249 260Right-handed alpha
Helix 3
AA3
A
262 275Right-handed alpha
Helix 4
AA4
A
276 280Right-handed 310
Helix 5
AA5
A
300 315Right-handed alpha
Helix 6
AA6
A
316 319Right-handed 310
Helix 7
AA7
A
320 327Right-handed alpha
Helix 8
AA8
A
327 347Right-handed alpha
Helix 9
AA9
B
14 35Right-handed alpha
Helix 10
AB1
B
36 51Right-handed alpha
Helix 11
AB2
B
53 58Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5JNO

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il