Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPQ entry

There are 56 chains in PDB entry 5JPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 36UNK 346
B
 UNK 36UNK 346
C
 UNK 36UNK 346
D
 UNK 36UNK 346
E
 UNK 36UNK 346
F
 UNK 36UNK 346
G
 VAL 1476LEU 3241
H
 UNK -4UNK 338
I
 ASN 20ARG 684
J
 UNK 36UNK 346
K
 UNK 36UNK 346
L
 UNK 36UNK 346
M
 UNK 20UNK 659
N
 UNK 36UNK 346
O
 UNK 20UNK 659
P
 UNK 36UNK 346
Q
 UNK 1UNK 504
R
 UNK 1UNK 397
S
 LYS 3LYS 377
T
 LYS 3LYS 377
U
 ALA 7THR 128
V
 ALA 7THR 128
W
 ILE 5LYS 231
X
 ILE 5LYS 231
Y
 GLY 130GLN 570
Z
 LYS 7ASN 361
a
 TRP 24LEU 113
b
 LYS 15LYS 167
c
 ILE 83GLU 274
d
 PHE 46GLN 169
e
 PRO 28LEU 252
f
 PRO 28LEU 252
g
 GLU 36LYS 209
h
 GLU 36LYS 209
i
 ARG 10GLU 934
j
 ARG 10GLU 934
k
 VAL 18ILE 293
l
 UNK 36UNK 346
m
 UNK 20UNK 659
n
 UNK 36UNK 346
o
 LYS 15LEU 229
p
 ALA 2TYR 260
q
 GLU 39ARG 225
r
 MET 1VAL 235
s
 ALA 2LYS 187
t
 GLY 2LYS 208
u
 SER 21GLY 185
v
 GLU 35ASN 151
w
 SER 2LYS 129
x
 PHE 10ARG 143
y
 MET 1PHE 157
z
 SER 4TYR 130
0
 THR 2LYS 149
1
 VAL 7ILE 53
2
 G 20 G 1629
3
 C 64 C 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are374 helices in PDB entry 5JPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
292 296Right-handed 310
Helix 2
AA2
B
292 296Right-handed 310
Helix 3
AA3
C
292 296Right-handed 310
Helix 4
AA4
D
292 296Right-handed 310
Helix 5
AA5
E
292 296Right-handed 310
Helix 6
AA6
F
292 296Right-handed 310
Helix 7
AA7
G
1477 1514Right-handed alpha
Helix 8
AA8
G
1526 1581Right-handed alpha
Helix 9
AA9
G
1602 1695Right-handed alpha
Helix 10
AB1
G
1751 1876Right-handed alpha
Helix 11
AB2
G
1880 1941Right-handed alpha
Helix 12
AB3
G
1955 1990Right-handed alpha
Helix 13
AB4
G
2010 2094Right-handed alpha
Helix 14
AB5
G
2106 2358Right-handed alpha
Helix 15
AB6
G
2359 2367Right-handed 310
Helix 16
AB7
G
2408 2650Right-handed alpha
Helix 17
AB8
G
2663 2819Right-handed alpha
Helix 18
AB9
G
2897 2977Right-handed alpha
Helix 19
AC1
G
3006 3192Right-handed alpha
Helix 20
AC2
G
3195 3197Right-handed 310
Helix 21
AC3
G
3198 3213Right-handed alpha
Helix 22
AC4
G
3215 3234Right-handed alpha
Helix 23
AC5
G
3236 3241Right-handed alpha
Helix 24
AC6
H
-3 29Right-handed alpha
Helix 25
AC7
H
31 46Right-handed alpha
Helix 26
AC8
H
48 66Right-handed alpha
Helix 27
AC9
H
68 89Right-handed alpha
Helix 28
AD1
H
91 112Right-handed alpha
Helix 29
AD2
H
114 135Right-handed alpha
Helix 30
AD3
H
138 159Right-handed alpha
Helix 31
AD4
H
161 189Right-handed alpha
Helix 32
AD5
H
191 217Right-handed alpha
Helix 33
AD6
H
219 246Right-handed alpha
Helix 34
AD7
H
248 266Right-handed alpha
Helix 35
AD8
H
268 287Right-handed alpha
Helix 36
AD9
H
289 317Right-handed alpha
Helix 37
AE1
H
319 338Right-handed alpha
Helix 38
AE2
I
292 296Right-handed 310
Helix 39
AE3
J
292 296Right-handed 310
Helix 40
AE4
K
292 296Right-handed 310
Helix 41
AE5
L
292 296Right-handed 310
Helix 42
AE6
N
292 296Right-handed 310
Helix 43
AE7
P
292 296Right-handed 310
Helix 44
AE8
Q
2 12Right-handed alpha
Helix 45
AE9
Q
14 26Right-handed alpha
Helix 46
AF1
Q
28 33Right-handed alpha
Helix 47
AF2
Q
35 46Right-handed alpha
Helix 48
AF3
Q
48 59Right-handed alpha
Helix 49
AF4
Q
61 72Right-handed alpha
Helix 50
AF5
Q
74 81Right-handed alpha
Helix 51
AF6
Q
83 96Right-handed alpha
Helix 52
AF7
Q
98 107Right-handed alpha
Helix 53
AF8
Q
109 120Right-handed alpha
Helix 54
AF9
Q
122 133Right-handed alpha
Helix 55
AG1
Q
135 153Right-handed alpha
Helix 56
AG2
Q
155 171Right-handed alpha
Helix 57
AG3
Q
302 316Right-handed alpha
Helix 58
AG4
Q
318 330Right-handed alpha
Helix 59
AG5
Q
332 340Right-handed alpha
Helix 60
AG6
Q
344 352Right-handed alpha
Helix 61
AG7
Q
354 366Right-handed alpha
Helix 62
AG8
Q
368 378Right-handed alpha
Helix 63
AG9
Q
380 392Right-handed alpha
Helix 64
AH1
Q
394 402Right-handed alpha
Helix 65
AH2
Q
404 416Right-handed alpha
Helix 66
AH3
Q
418 430Right-handed alpha
Helix 67
AH4
Q
432 444Right-handed alpha
Helix 68
AH5
Q
446 454Right-handed alpha
Helix 69
AH6
Q
456 464Right-handed alpha
Helix 70
AH7
Q
466 474Right-handed alpha
Helix 71
AH8
Q
476 484Right-handed alpha
Helix 72
AH9
Q
486 494Right-handed alpha
Helix 73
AI1
Q
496 504Right-handed alpha
Helix 74
AI2
R
2 41Right-handed alpha
Helix 75
AI3
R
52 68Right-handed alpha
Helix 76
AI4
R
72 82Right-handed alpha
Helix 77
AI5
R
87 97Right-handed alpha
Helix 78
AI6
R
102 141Right-handed alpha
Helix 79
AI7
R
152 168Right-handed alpha
Helix 80
AI8
R
172 182Right-handed alpha
Helix 81
AI9
R
187 197Right-handed alpha
Helix 82
AJ1
R
202 241Right-handed alpha
Helix 83
AJ2
R
252 268Right-handed alpha
Helix 84
AJ3
R
272 282Right-handed alpha
Helix 85
AJ4
R
287 297Right-handed alpha
Helix 86
AJ5
R
302 341Right-handed alpha
Helix 87
AJ6
R
352 368Right-handed alpha
Helix 88
AJ7
R
372 382Right-handed alpha
Helix 89
AJ8
R
387 397Right-handed alpha
Helix 90
AJ9
S
31 44Right-handed alpha
Helix 91
AK1
S
48 58Right-handed alpha
Helix 92
AK2
S
70 77Right-handed alpha
Helix 93
AK3
S
87 96Right-handed alpha
Helix 94
AK4
S
99 104Right-handed alpha
Helix 95
AK5
S
110 128Right-handed alpha
Helix 96
AK6
S
138 166Right-handed alpha
Helix 97
AK7
S
167 168Right-handed 310
Helix 98
AK8
S
169 173Right-handed 310
Helix 99
AK9
S
178 189Right-handed alpha
Helix 100
AL1
S
191 195Right-handed 310
Helix 101
AL2
S
196 202Right-handed alpha
Helix 102
AL3
S
206 219Right-handed alpha
Helix 103
AL4
S
226 262Right-handed alpha
Helix 104
AL5
S
262 282Right-handed alpha
Helix 105
AL6
S
283 289Right-handed alpha
Helix 106
AL7
S
291 296Right-handed alpha
Helix 107
AL8
S
300 311Right-handed alpha
Helix 108
AL9
S
318 322Right-handed 310
Helix 109
AM1
S
323 329Right-handed alpha
Helix 110
AM2
S
330 354Right-handed alpha
Helix 111
AM3
S
359 376Right-handed alpha
Helix 112
AM4
T
31 43Right-handed alpha
Helix 113
AM5
T
48 58Right-handed alpha
Helix 114
AM6
T
70 76Right-handed alpha
Helix 115
AM7
T
87 96Right-handed alpha
Helix 116
AM8
T
99 104Right-handed alpha
Helix 117
AM9
T
110 128Right-handed alpha
Helix 118
AN1
T
138 166Right-handed alpha
Helix 119
AN2
T
167 168Right-handed 310
Helix 120
AN3
T
169 173Right-handed 310
Helix 121
AN4
T
178 189Right-handed alpha
Helix 122
AN5
T
191 195Right-handed 310
Helix 123
AN6
T
196 202Right-handed alpha
Helix 124
AN7
T
206 219Right-handed alpha
Helix 125
AN8
T
226 262Right-handed alpha
Helix 126
AN9
T
262 270Right-handed alpha
Helix 127
AO1
T
270 282Right-handed alpha
Helix 128
AO2
T
283 289Right-handed alpha
Helix 129
AO3
T
291 296Right-handed alpha
Helix 130
AO4
T
300 311Right-handed alpha
Helix 131
AO5
T
318 322Right-handed 310
Helix 132
AO6
T
323 329Right-handed alpha
Helix 133
AO7
T
330 354Right-handed alpha
Helix 134
AO8
T
359 375Right-handed alpha
Helix 135
AO9
U
15 33Right-handed alpha
Helix 136
AP1
U
38 48Right-handed alpha
Helix 137
AP2
U
62 66Right-handed 310
Helix 138
AP3
U
67 76Right-handed alpha
Helix 139
AP4
U
85 93Right-handed alpha
Helix 140
AP5
U
110 124Right-handed alpha
Helix 141
AP6
V
15 33Right-handed alpha
Helix 142
AP7
V
38 48Right-handed alpha
Helix 143
AP8
V
62 66Right-handed 310
Helix 144
AP9
V
67 77Right-handed alpha
Helix 145
AQ1
V
85 93Right-handed alpha
Helix 146
AQ2
V
110 124Right-handed alpha
Helix 147
AQ3
W
59 67Right-handed alpha
Helix 148
AQ4
W
88 99Right-handed alpha
Helix 149
AQ5
W
110 123Right-handed alpha
Helix 150
AQ6
W
136 140Right-handed 310
Helix 151
AQ7
W
158 170Right-handed alpha
Helix 152
AQ8
W
183 187Right-handed alpha
Helix 153
AQ9
W
191 206Right-handed alpha
Helix 154
AR1
X
59 67Right-handed alpha
Helix 155
AR2
X
88 99Right-handed alpha
Helix 156
AR3
X
110 124Right-handed alpha
Helix 157
AR4
X
136 140Right-handed 310
Helix 158
AR5
X
158 170Right-handed alpha
Helix 159
AR6
X
183 187Right-handed alpha
Helix 160
AR7
X
191 206Right-handed alpha
Helix 161
AR8
Y
217 221Right-handed 310
Helix 162
AR9
Y
341 343Right-handed 310
Helix 163
AS1
Y
364 373Right-handed alpha
Helix 164
AS2
Z
16 28Right-handed alpha
Helix 165
AS3
Z
46 59Right-handed alpha
Helix 166
AS4
Z
95 105Right-handed alpha
Helix 167
AS5
Z
106 110Right-handed 310
Helix 168
AS6
Z
129 136Right-handed alpha
Helix 169
AS7
Z
136 144Right-handed alpha
Helix 170
AS8
Z
202 217Right-handed alpha
Helix 171
AS9
Z
232 236Right-handed 310
Helix 172
AT1
Z
267 285Right-handed alpha
Helix 173
AT2
Z
293 303Right-handed alpha
Helix 174
AT3
Z
314 318Right-handed 310
Helix 175
AT4
Z
319 334Right-handed alpha
Helix 176
AT5
a
25 31Right-handed alpha
Helix 177
AT6
a
36 45Right-handed alpha
Helix 178
AT7
a
94 102Right-handed alpha
Helix 179
AT8
a
103 104Right-handed 310
Helix 180
AT9
a
105 112Right-handed 310
Helix 181
AU1
b
22 36Right-handed alpha
Helix 182
AU2
b
40 63Right-handed alpha
Helix 183
AU3
b
68 85Right-handed alpha
Helix 184
AU4
b
95 100Right-handed alpha
Helix 185
AU5
b
102 108Right-handed alpha
Helix 186
AU6
b
110 118Right-handed alpha
Helix 187
AU7
b
123 131Right-handed alpha
Helix 188
AU8
b
151 155Right-handed 310
Helix 189
AU9
c
97 108Right-handed alpha
Helix 190
AV1
c
125 135Right-handed alpha
Helix 191
AV2
c
202 212Right-handed alpha
Helix 192
AV3
d
61 71Right-handed alpha
Helix 193
AV4
d
74 84Right-handed alpha
Helix 194
AV5
d
93 103Right-handed alpha
Helix 195
AV6
d
108 114Right-handed alpha
Helix 196
AV7
d
115 118Right-handed 310
Helix 197
AV8
d
129 139Right-handed alpha
Helix 198
AV9
d
150 159Right-handed alpha
Helix 199
AW1
e
69 74Right-handed alpha
Helix 200
AW2
e
83 87Right-handed 310
Helix 201
AW3
e
88 101Right-handed alpha
Helix 202
AW4
e
102 107Right-handed alpha
Helix 203
AW5
e
133 148Right-handed alpha
Helix 204
AW6
e
166 170Right-handed 310
Helix 205
AW7
e
188 195Right-handed alpha
Helix 206
AW8
e
213 218Right-handed 310
Helix 207
AW9
e
233 249Right-handed alpha
Helix 208
AX1
f
73 80Right-handed alpha
Helix 209
AX2
f
88 101Right-handed alpha
Helix 210
AX3
f
102 107Right-handed alpha
Helix 211
AX4
f
133 148Right-handed alpha
Helix 212
AX5
f
166 171Right-handed alpha
Helix 213
AX6
f
188 195Right-handed alpha
Helix 214
AX7
f
233 249Right-handed alpha
Helix 215
AX8
g
44 46Right-handed 310
Helix 216
AX9
g
47 64Right-handed alpha
Helix 217
AY1
g
90 104Right-handed alpha
Helix 218
AY2
g
107 112Right-handed alpha
Helix 219
AY3
g
113 116Right-handed 310
Helix 220
AY4
g
133 145Right-handed alpha
Helix 221
AY5
g
148 159Right-handed alpha
Helix 222
AY6
g
174 190Right-handed alpha
Helix 223
AY7
g
194 208Right-handed alpha
Helix 224
AY8
h
44 46Right-handed 310
Helix 225
AY9
h
47 64Right-handed alpha
Helix 226
AZ1
h
90 104Right-handed alpha
Helix 227
AZ2
h
107 112Right-handed alpha
Helix 228
AZ3
h
113 116Right-handed 310
Helix 229
AZ4
h
133 145Right-handed alpha
Helix 230
AZ5
h
148 159Right-handed alpha
Helix 231
AZ6
h
174 190Right-handed alpha
Helix 232
AZ7
h
194 208Right-handed alpha
Helix 233
AZ8
i
11 22Right-handed alpha
Helix 234
AZ9
i
36 48Right-handed alpha
Helix 235
BA1
i
132 143Right-handed alpha
Helix 236
BA2
i
155 160Right-handed alpha
Helix 237
BA3
i
170 174Right-handed 310
Helix 238
BA4
i
182 196Right-handed alpha
Helix 239
BA5
i
260 265Right-handed alpha
Helix 240
BA6
i
290 302Right-handed alpha
Helix 241
BA7
i
319 327Right-handed alpha
Helix 242
BA8
i
373 378Right-handed alpha
Helix 243
BA9
i
391 394Right-handed 310
Helix 244
BB1
i
395 404Right-handed alpha
Helix 245
BB2
i
421 431Right-handed alpha
Helix 246
BB3
i
484 495Right-handed alpha
Helix 247
BB4
i
522 527Right-handed 310
Helix 248
BB5
i
533 548Right-handed alpha
Helix 249
BB6
i
552 562Right-handed alpha
Helix 250
BB7
i
616 622Right-handed alpha
Helix 251
BB8
i
626 629Right-handed 310
Helix 252
BB9
i
648 660Right-handed alpha
Helix 253
BC1
i
730 740Right-handed alpha
Helix 254
BC2
i
770 794Right-handed alpha
Helix 255
BC3
i
835 847Right-handed alpha
Helix 256
BC4
i
850 856Right-handed alpha
Helix 257
BC5
i
859 868Right-handed alpha
Helix 258
BC6
i
882 889Right-handed alpha
Helix 259
BC7
i
893 902Right-handed alpha
Helix 260
BC8
i
906 924Right-handed alpha
Helix 261
BC9
i
924 934Right-handed alpha
Helix 262
BD1
j
11 22Right-handed alpha
Helix 263
BD2
j
36 48Right-handed alpha
Helix 264
BD3
j
132 143Right-handed alpha
Helix 265
BD4
j
155 160Right-handed alpha
Helix 266
BD5
j
170 174Right-handed 310
Helix 267
BD6
j
182 196Right-handed alpha
Helix 268
BD7
j
260 265Right-handed alpha
Helix 269
BD8
j
290 302Right-handed alpha
Helix 270
BD9
j
319 327Right-handed alpha
Helix 271
BE1
j
373 378Right-handed alpha
Helix 272
BE2
j
391 394Right-handed 310
Helix 273
BE3
j
395 404Right-handed alpha
Helix 274
BE4
j
421 431Right-handed alpha
Helix 275
BE5
j
484 495Right-handed alpha
Helix 276
BE6
j
522 527Right-handed 310
Helix 277
BE7
j
533 548Right-handed alpha
Helix 278
BE8
j
552 562Right-handed alpha
Helix 279
BE9
j
595 601Right-handed alpha
Helix 280
BF1
j
601 606Right-handed alpha
Helix 281
BF2
j
616 622Right-handed alpha
Helix 282
BF3
j
626 629Right-handed 310
Helix 283
BF4
j
648 660Right-handed alpha
Helix 284
BF5
j
730 740Right-handed alpha
Helix 285
BF6
j
770 794Right-handed alpha
Helix 286
BF7
j
835 847Right-handed alpha
Helix 287
BF8
j
850 856Right-handed alpha
Helix 288
BF9
j
859 868Right-handed alpha
Helix 289
BG1
j
882 889Right-handed alpha
Helix 290
BG2
j
893 902Right-handed alpha
Helix 291
BG3
j
906 924Right-handed alpha
Helix 292
BG4
j
924 934Right-handed alpha
Helix 293
BG5
k
19 34Right-handed alpha
Helix 294
BG6
k
104 110Right-handed alpha
Helix 295
BG7
k
131 139Right-handed alpha
Helix 296
BG8
k
139 150Right-handed alpha
Helix 297
BG9
k
158 160Right-handed 310
Helix 298
BH1
k
161 167Right-handed alpha
Helix 299
BH2
k
167 172Right-handed alpha
Helix 300
BH3
k
251 270Right-handed alpha
Helix 301
BH4
k
273 276Right-handed 310
Helix 302
BH5
l
292 296Right-handed 310
Helix 303
BH6
n
292 296Right-handed 310
Helix 304
BH7
o
62 65Right-handed 310
Helix 305
BH8
o
109 116Right-handed alpha
Helix 306
BH9
o
163 184Right-handed alpha
Helix 307
BI1
o
186 196Right-handed alpha
Helix 308
BI2
o
197 208Right-handed alpha
Helix 309
BI3
p
10 14Right-handed 310
Helix 310
BI4
p
15 19Right-handed 310
Helix 311
BI5
p
44 49Right-handed alpha
Helix 312
BI6
p
57 65Right-handed alpha
Helix 313
BI7
p
96 98Right-handed 310
Helix 314
BI8
p
119 121Right-handed 310
Helix 315
BI9
p
249 258Right-handed alpha
Helix 316
BJ1
q
93 98Right-handed alpha
Helix 317
BJ2
q
109 124Right-handed alpha
Helix 318
BJ3
q
129 139Right-handed alpha
Helix 319
BJ4
q
164 181Right-handed alpha
Helix 320
BJ5
q
189 195Right-handed alpha
Helix 321
BJ6
q
198 202Right-handed 310
Helix 322
BJ7
q
212 219Right-handed alpha
Helix 323
BJ8
r
20 25Right-handed alpha
Helix 324
BJ9
r
121 126Right-handed alpha
Helix 325
BK1
r
137 146Right-handed alpha
Helix 326
BK2
r
152 159Right-handed alpha
Helix 327
BK3
r
184 226Right-handed alpha
Helix 328
BK4
r
226 231Right-handed alpha
Helix 329
BK5
s
13 30Right-handed alpha
Helix 330
BK6
s
31 40Right-handed alpha
Helix 331
BK7
s
69 87Right-handed alpha
Helix 332
BK8
s
114 117Right-handed 310
Helix 333
BK9
s
118 131Right-handed alpha
Helix 334
BL1
s
159 178Right-handed alpha
Helix 335
BL2
t
6 9Right-handed 310
Helix 336
BL3
t
25 29Right-handed 310
Helix 337
BL4
t
96 101Right-handed alpha
Helix 338
BL5
t
114 126Right-handed alpha
Helix 339
BL6
t
131 135Right-handed 310
Helix 340
BL7
t
146 154Right-handed alpha
Helix 341
BL8
t
160 170Right-handed alpha
Helix 342
BL9
t
179 184Right-handed alpha
Helix 343
BM1
t
192 208Right-handed alpha
Helix 344
BM2
u
22 37Right-handed alpha
Helix 345
BM3
u
42 60Right-handed alpha
Helix 346
BM4
u
67 78Right-handed alpha
Helix 347
BM5
u
93 99Right-handed alpha
Helix 348
BM6
u
122 130Right-handed alpha
Helix 349
BM7
v
36 40Right-handed 310
Helix 350
BM8
v
41 46Right-handed alpha
Helix 351
BM9
v
65 74Right-handed alpha
Helix 352
BN1
v
90 98Right-handed alpha
Helix 353
BN2
v
99 105Right-handed alpha
Helix 354
BN3
v
108 116Right-handed alpha
Helix 355
BN4
v
116 131Right-handed alpha
Helix 356
BN5
w
56 60Right-handed 310
Helix 357
BN6
w
67 71Right-handed 310
Helix 358
BN7
w
98 107Right-handed alpha
Helix 359
BN8
x
48 53Right-handed alpha
Helix 360
BN9
x
54 56Right-handed 310
Helix 361
BO1
x
73 87Right-handed alpha
Helix 362
BO2
y
17 24Right-handed 310
Helix 363
BO3
y
44 49Right-handed alpha
Helix 364
BO4
z
5 19Right-handed alpha
Helix 365
BO5
z
31 45Right-handed alpha
Helix 366
BO6
z
83 88Right-handed alpha
Helix 367
BO7
z
89 92Right-handed 310
Helix 368
BO8
0
34 47Right-handed alpha