Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JRB entry

There are 11 chains in PDB entry 5JRB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 25	CYS 208
B	CYS 25	CYS 208
C	CYS 25	CYS 208
D	CYS 25	CYS 208
E	CYS 25	CYS 208
F	CYS 25	CYS 208
G	CYS 25	CYS 208
H	CYS 25	CYS 208
I	CYS 25	CYS 208
J	CYS 25	CYS 208
K	CYS 25	MET 212

There are 81 helices in PDB entry 5JRB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	44	Right-handed alpha
Helix 2	AA2	A	48	50	Right-handed 310
Helix 3	AA3	A	67	80	Right-handed alpha
Helix 4	AA4	A	134	156	Right-handed alpha
Helix 5	AA5	A	157	167	Right-handed 310
Helix 6	AA6	A	168	177	Right-handed alpha
Helix 7	AA7	A	187	191	Right-handed 310
Helix 8	AA8	A	197	206	Right-handed alpha
Helix 9	AA9	B	32	45	Right-handed alpha
Helix 10	AB1	B	48	52	Right-handed 310
Helix 11	AB2	B	67	80	Right-handed alpha
Helix 12	AB3	B	134	157	Right-handed alpha
Helix 13	AB4	B	158	167	Right-handed 310
Helix 14	AB5	B	168	177	Right-handed alpha
Helix 15	AB6	B	197	207	Right-handed alpha
Helix 16	AB7	C	32	45	Right-handed alpha
Helix 17	AB8	C	48	50	Right-handed 310
Helix 18	AB9	C	67	80	Right-handed alpha
Helix 19	AC1	C	134	157	Right-handed alpha
Helix 20	AC2	C	158	167	Right-handed 310
Helix 21	AC3	C	168	177	Right-handed alpha
Helix 22	AC4	C	197	207	Right-handed alpha
Helix 23	AC5	D	32	44	Right-handed alpha
Helix 24	AC6	D	48	52	Right-handed 310
Helix 25	AC7	D	67	80	Right-handed alpha
Helix 26	AC8	D	134	157	Right-handed alpha
Helix 27	AC9	D	158	167	Right-handed 310
Helix 28	AD1	D	168	177	Right-handed alpha
Helix 29	AD2	D	187	191	Right-handed 310
Helix 30	AD3	D	197	206	Right-handed alpha
Helix 31	AD4	E	32	44	Right-handed alpha
Helix 32	AD5	E	48	50	Right-handed 310
Helix 33	AD6	E	58	60	Right-handed 310
Helix 34	AD7	E	67	80	Right-handed alpha
Helix 35	AD8	E	134	157	Right-handed alpha
Helix 36	AD9	E	158	167	Right-handed 310
Helix 37	AE1	E	168	177	Right-handed alpha
Helix 38	AE2	E	187	191	Right-handed 310
Helix 39	AE3	E	197	206	Right-handed alpha
Helix 40	AE4	F	32	45	Right-handed alpha
Helix 41	AE5	F	67	80	Right-handed alpha
Helix 42	AE6	F	134	157	Right-handed alpha
Helix 43	AE7	F	158	167	Right-handed 310
Helix 44	AE8	F	168	178	Right-handed alpha
Helix 45	AE9	F	187	191	Right-handed 310
Helix 46	AF1	F	197	206	Right-handed alpha
Helix 47	AF2	G	32	45	Right-handed alpha
Helix 48	AF3	G	48	50	Right-handed 310
Helix 49	AF4	G	67	80	Right-handed alpha
Helix 50	AF5	G	134	156	Right-handed alpha
Helix 51	AF6	G	157	167	Right-handed 310
Helix 52	AF7	G	168	177	Right-handed alpha
Helix 53	AF8	G	197	207	Right-handed alpha
Helix 54	AF9	H	32	43	Right-handed alpha
Helix 55	AG1	H	48	50	Right-handed 310
Helix 56	AG2	H	67	80	Right-handed alpha
Helix 57	AG3	H	134	157	Right-handed alpha
Helix 58	AG4	H	158	167	Right-handed 310
Helix 59	AG5	H	168	177	Right-handed alpha
Helix 60	AG6	H	197	206	Right-handed alpha
Helix 61	AG7	I	32	44	Right-handed alpha
Helix 62	AG8	I	67	80	Right-handed alpha
Helix 63	AG9	I	134	157	Right-handed alpha
Helix 64	AH1	I	158	167	Right-handed 310
Helix 65	AH2	I	168	177	Right-handed alpha
Helix 66	AH3	I	197	206	Right-handed alpha
Helix 67	AH4	J	32	45	Right-handed alpha
Helix 68	AH5	J	48	50	Right-handed 310
Helix 69	AH6	J	67	80	Right-handed alpha
Helix 70	AH7	J	134	157	Right-handed alpha
Helix 71	AH8	J	158	167	Right-handed 310
Helix 72	AH9	J	168	177	Right-handed alpha
Helix 73	AI1	J	197	207	Right-handed alpha
Helix 74	AI2	K	32	45	Right-handed alpha
Helix 75	AI3	K	48	50	Right-handed 310
Helix 76	AI4	K	67	80	Right-handed alpha
Helix 77	AI5	K	134	157	Right-handed alpha
Helix 78	AI6	K	158	167	Right-handed 310
Helix 79	AI7	K	168	176	Right-handed alpha
Helix 80	AI8	K	187	191	Right-handed 310
Helix 81	AI9	K	197	205	Right-handed alpha

There are 22 sheets in PDB entry 5JRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	60	66	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	99	first strand
Strand 2	A	102	115	anti-parallel
Strand 3	A	120	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	62	65	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	99	first strand
Strand 2	B	102	115	anti-parallel
Strand 3	B	120	132	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	62	66	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	99	first strand
Strand 2	C	102	115	anti-parallel
Strand 3	C	120	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	62	65	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	99	first strand
Strand 2	D	102	115	anti-parallel
Strand 3	D	120	130	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	62	66	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	99	first strand
Strand 2	E	102	115	anti-parallel
Strand 3	E	120	130	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	62	65	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	99	first strand
Strand 2	F	102	115	anti-parallel
Strand 3	F	120	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	56	first strand
Strand 2	G	62	66	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	99	first strand
Strand 2	G	102	115	anti-parallel
Strand 3	G	120	132	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	56	first strand
Strand 2	H	62	66	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	99	first strand
Strand 2	H	102	115	anti-parallel
Strand 3	H	120	132	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	56	first strand
Strand 2	I	62	66	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	99	first strand
Strand 2	I	102	115	anti-parallel
Strand 3	I	120	130	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	56	first strand
Strand 2	J	62	66	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	99	first strand
Strand 2	J	102	115	anti-parallel
Strand 3	J	120	132	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	56	first strand
Strand 2	K	62	66	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	99	first strand
Strand 2	K	102	115	anti-parallel
Strand 3	K	120	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JRB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JRB