Analysis of interatomic Contacts of Structural Units in PDB entry:
5JYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JYO entry

There are 8 chains in PDB entry 5JYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 218	ASP 531
A	GLY 218	ASP 531
B	GLY 218	ASP 531
C	GLY 218	ASP 531
E	GLY 218	ASP 531
F	GLY 218	ASP 531
G	GLY 218	ASP 531
H	GLY 218	ASP 531

There are114 helices in PDB entry 5JYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	223	240	Right-handed alpha
Helix 2	AA2	D	250	255	Right-handed alpha
Helix 3	AA3	D	287	301	Right-handed alpha
Helix 4	AA4	D	301	306	Right-handed alpha
Helix 5	AA5	D	334	345	Right-handed alpha
Helix 6	AA6	D	350	366	Right-handed alpha
Helix 7	AA7	D	374	385	Right-handed alpha
Helix 8	AA8	D	385	398	Right-handed alpha
Helix 9	AA9	D	406	419	Right-handed alpha
Helix 10	AB1	D	423	436	Right-handed alpha
Helix 11	AB2	D	449	464	Right-handed alpha
Helix 12	AB3	D	465	467	Right-handed 310
Helix 13	AB4	D	468	476	Right-handed alpha
Helix 14	AB5	D	511	526	Right-handed alpha
Helix 15	AB6	A	223	240	Right-handed alpha
Helix 16	AB7	A	250	255	Right-handed alpha
Helix 17	AB8	A	287	301	Right-handed alpha
Helix 18	AB9	A	301	306	Right-handed alpha
Helix 19	AC1	A	334	345	Right-handed alpha
Helix 20	AC2	A	350	366	Right-handed alpha
Helix 21	AC3	A	374	385	Right-handed alpha
Helix 22	AC4	A	385	398	Right-handed alpha
Helix 23	AC5	A	406	419	Right-handed alpha
Helix 24	AC6	A	423	436	Right-handed alpha
Helix 25	AC7	A	449	464	Right-handed alpha
Helix 26	AC8	A	465	467	Right-handed 310
Helix 27	AC9	A	468	476	Right-handed alpha
Helix 28	AD1	A	511	526	Right-handed alpha
Helix 29	AD2	B	223	240	Right-handed alpha
Helix 30	AD3	B	250	255	Right-handed alpha
Helix 31	AD4	B	285	287	Right-handed 310
Helix 32	AD5	B	288	301	Right-handed alpha
Helix 33	AD6	B	301	306	Right-handed alpha
Helix 34	AD7	B	334	345	Right-handed alpha
Helix 35	AD8	B	350	366	Right-handed alpha
Helix 36	AD9	B	374	384	Right-handed alpha
Helix 37	AE1	B	385	398	Right-handed alpha
Helix 38	AE2	B	406	419	Right-handed alpha
Helix 39	AE3	B	423	436	Right-handed alpha
Helix 40	AE4	B	449	464	Right-handed alpha
Helix 41	AE5	B	465	467	Right-handed 310
Helix 42	AE6	B	468	476	Right-handed alpha
Helix 43	AE7	B	511	526	Right-handed alpha
Helix 44	AE8	C	223	240	Right-handed alpha
Helix 45	AE9	C	250	255	Right-handed alpha
Helix 46	AF1	C	285	287	Right-handed 310
Helix 47	AF2	C	288	301	Right-handed alpha
Helix 48	AF3	C	301	306	Right-handed alpha
Helix 49	AF4	C	334	345	Right-handed alpha
Helix 50	AF5	C	350	366	Right-handed alpha
Helix 51	AF6	C	374	384	Right-handed alpha
Helix 52	AF7	C	385	398	Right-handed alpha
Helix 53	AF8	C	406	419	Right-handed alpha
Helix 54	AF9	C	423	436	Right-handed alpha
Helix 55	AG1	C	449	464	Right-handed alpha
Helix 56	AG2	C	465	467	Right-handed 310
Helix 57	AG3	C	468	476	Right-handed alpha
Helix 58	AG4	C	511	526	Right-handed alpha
Helix 59	AG5	E	223	240	Right-handed alpha
Helix 60	AG6	E	250	255	Right-handed alpha
Helix 61	AG7	E	287	301	Right-handed alpha
Helix 62	AG8	E	301	306	Right-handed alpha
Helix 63	AG9	E	334	343	Right-handed alpha
Helix 64	AH1	E	350	366	Right-handed alpha
Helix 65	AH2	E	374	384	Right-handed alpha
Helix 66	AH3	E	385	398	Right-handed alpha
Helix 67	AH4	E	406	419	Right-handed alpha
Helix 68	AH5	E	423	436	Right-handed alpha
Helix 69	AH6	E	449	464	Right-handed alpha
Helix 70	AH7	E	465	467	Right-handed 310
Helix 71	AH8	E	468	476	Right-handed alpha
Helix 72	AH9	E	511	526	Right-handed alpha
Helix 73	AI1	F	223	240	Right-handed alpha
Helix 74	AI2	F	250	255	Right-handed alpha
Helix 75	AI3	F	287	301	Right-handed alpha
Helix 76	AI4	F	301	306	Right-handed alpha
Helix 77	AI5	F	334	345	Right-handed alpha
Helix 78	AI6	F	350	366	Right-handed alpha
Helix 79	AI7	F	374	385	Right-handed alpha
Helix 80	AI8	F	385	398	Right-handed alpha
Helix 81	AI9	F	406	419	Right-handed alpha
Helix 82	AJ1	F	423	436	Right-handed alpha
Helix 83	AJ2	F	449	464	Right-handed alpha
Helix 84	AJ3	F	465	467	Right-handed 310
Helix 85	AJ4	F	468	476	Right-handed alpha
Helix 86	AJ5	F	511	526	Right-handed alpha
Helix 87	AJ6	G	223	240	Right-handed alpha
Helix 88	AJ7	G	250	255	Right-handed alpha
Helix 89	AJ8	G	287	301	Right-handed alpha
Helix 90	AJ9	G	301	306	Right-handed alpha
Helix 91	AK1	G	334	345	Right-handed alpha
Helix 92	AK2	G	350	366	Right-handed alpha
Helix 93	AK3	G	374	385	Right-handed alpha
Helix 94	AK4	G	385	398	Right-handed alpha
Helix 95	AK5	G	406	419	Right-handed alpha
Helix 96	AK6	G	423	436	Right-handed alpha
Helix 97	AK7	G	449	464	Right-handed alpha
Helix 98	AK8	G	465	467	Right-handed 310
Helix 99	AK9	G	468	476	Right-handed alpha
Helix 100	AL1	G	511	526	Right-handed alpha
Helix 101	AL2	H	223	240	Right-handed alpha
Helix 102	AL3	H	250	255	Right-handed alpha
Helix 103	AL4	H	287	301	Right-handed alpha
Helix 104	AL5	H	301	306	Right-handed alpha
Helix 105	AL6	H	334	345	Right-handed alpha
Helix 106	AL7	H	350	366	Right-handed alpha
Helix 107	AL8	H	374	385	Right-handed alpha
Helix 108	AL9	H	385	398	Right-handed alpha
Helix 109	AM1	H	406	419	Right-handed alpha
Helix 110	AM2	H	423	436	Right-handed alpha
Helix 111	AM3	H	449	464	Right-handed alpha
Helix 112	AM4	H	465	467	Right-handed 310
Helix 113	AM5	H	468	476	Right-handed alpha
Helix 114	AM6	H	511	526	Right-handed alpha

There are 24 sheets in PDB entry 5JYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	504	505	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	487	492	anti-parallel
Strand 5	D	480	482	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	283	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	371	373	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	504	505	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	487	492	anti-parallel
Strand 5	A	480	482	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	371	373	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	504	505	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	487	492	anti-parallel
Strand 5	B	480	482	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	371	373	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	504	505	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	487	492	anti-parallel
Strand 5	C	480	482	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	371	373	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	246	first strand
Strand 2	E	504	505	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	276	first strand
Strand 2	E	262	267	anti-parallel
Strand 3	E	496	501	anti-parallel
Strand 4	E	487	492	anti-parallel
Strand 5	E	480	482	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	283	first strand
Strand 2	E	420	422	anti-parallel
Strand 3	E	372	373	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	246	first strand
Strand 2	F	504	505	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	276	first strand
Strand 2	F	262	267	anti-parallel
Strand 3	F	496	501	anti-parallel
Strand 4	F	487	492	anti-parallel
Strand 5	F	480	482	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	283	first strand
Strand 2	F	420	422	anti-parallel
Strand 3	F	371	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	245	246	first strand
Strand 2	G	504	505	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	276	first strand
Strand 2	G	262	267	anti-parallel
Strand 3	G	496	501	anti-parallel
Strand 4	G	487	492	anti-parallel
Strand 5	G	480	482	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	283	first strand
Strand 2	G	420	422	anti-parallel
Strand 3	G	371	373	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	246	first strand
Strand 2	H	504	505	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	272	276	first strand
Strand 2	H	262	267	anti-parallel
Strand 3	H	496	501	anti-parallel
Strand 4	H	487	492	anti-parallel
Strand 5	H	480	482	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	283	first strand
Strand 2	H	420	422	anti-parallel
Strand 3	H	371	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JYO