Analysis of interatomic Contacts of Structural Units in PDB entry:
5JZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JZ8 entry

There are 2 chains in PDB entry 5JZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 330ILE 758
B
 GLY 99PHE 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5JZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 340Right-handed alpha
Helix 2
AA2
A
341 354Right-handed alpha
Helix 3
AA3
A
356 371Right-handed alpha
Helix 4
AA4
A
374 393Right-handed alpha
Helix 5
AA5
A
394 411Right-handed alpha
Helix 6
AA6
A
415 433Right-handed alpha
Helix 7
AA7
A
435 450Right-handed alpha
Helix 8
AA8
A
453 467Right-handed alpha
Helix 9
AA9
A
469 484Right-handed alpha
Helix 10
AB1
A
487 501Right-handed alpha
Helix 11
AB2
A
503 518Right-handed alpha
Helix 12
AB3
A
524 538Right-handed alpha
Helix 13
AB4
A
542 553Right-handed alpha
Helix 14
AB5
A
577 582Right-handed alpha
Helix 15
AB6
A
583 593Right-handed alpha
Helix 16
AB7
A
593 608Right-handed alpha
Helix 17
AB8
A
609 612Right-handed 310
Helix 18
AB9
A
637 642Right-handed alpha
Helix 19
AC1
A
644 652Right-handed alpha
Helix 20
AC2
A
654 659Right-handed alpha
Helix 21
AC3
A
748 755Right-handed alpha
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There are 3 sheets in PDB entry 5JZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
613 614anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
635 636anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
674 679anti-parallel
Strand 3
A
725 729anti-parallel
Strand 4
A
700 704anti-parallel
Strand 5
A
707 709anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il