Analysis of interatomic Contacts of Structural Units in PDB entry:
5KG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KG5 entry

There are 3 chains in PDB entry 5KG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -2SER 432
T
C 1 T 12
P
A 1 DT 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5KG5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
16 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
51 56Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
162 178Right-handed alpha
Helix 9
AA9
A
185 209Right-handed alpha
Helix 10
AB1
A
219 230Right-handed alpha
Helix 11
AB2
A
242 249Right-handed alpha
Helix 12
AB3
A
250 255Right-handed 310
Helix 13
AB4
A
260 271Right-handed alpha
Helix 14
AB5
A
274 281Right-handed 310
Helix 15
AB6
A
282 291Right-handed alpha
Helix 16
AB7
A
291 302Right-handed alpha
Helix 17
AB8
A
326 330Right-handed 310
Helix 18
AB9
A
334 360Right-handed alpha
Helix 19
AC1
A
391 404Right-handed alpha
Helix 20
AC2
A
405 407Right-handed 310
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There are 5 sheets in PDB entry 5KG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 113first strand
Strand 2
A
116 120anti-parallel
Strand 3
A
9 14anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
235 237parallel
Strand 6
A
145 147parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 50first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
76 79parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 83first strand
Strand 2
A
86 87anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
319 324first strand
Strand 2
A
414 431anti-parallel
Strand 3
A
331 333anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
319 324first strand
Strand 2
A
414 431anti-parallel
Strand 3
A
361 372anti-parallel
Strand 4
A
381 386anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il