Analysis of interatomic Contacts of Structural Units in PDB entry:
5KK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KK5 entry

There are 2 chains in PDB entry 5KK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ASN 1307
B
 A -19 A -2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5KK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
35 69Right-handed alpha
Helix 3
AA3
A
73 82Right-handed alpha
Helix 4
AA4
A
88 112Right-handed alpha
Helix 5
AA5
A
118 133Right-handed alpha
Helix 6
AA6
A
135 140Right-handed alpha
Helix 7
AA7
A
140 146Right-handed alpha
Helix 8
AA8
A
152 160Right-handed alpha
Helix 9
AA9
A
165 168Right-handed 310
Helix 10
AB1
A
169 181Right-handed alpha
Helix 11
AB2
A
188 195Right-handed alpha
Helix 12
AB3
A
196 215Right-handed alpha
Helix 13
AB4
A
215 230Right-handed alpha
Helix 14
AB5
A
236 241Right-handed alpha
Helix 15
AB6
A
242 249Right-handed alpha
Helix 16
AB7
A
251 263Right-handed alpha
Helix 17
AB8
A
276 287Right-handed alpha
Helix 18
AB9
A
289 298Right-handed alpha
Helix 19
AC1
A
325 344Right-handed alpha
Helix 20
AC2
A
345 359Right-handed alpha
Helix 21
AC3
A
367 379Right-handed alpha
Helix 22
AC4
A
381 396Right-handed alpha
Helix 23
AC5
A
402 416Right-handed alpha
Helix 24
AC6
A
420 428Right-handed alpha
Helix 25
AC7
A
429 452Right-handed alpha
Helix 26
AC8
A
460 483Right-handed alpha
Helix 27
AC9
A
493 522Right-handed alpha
Helix 28
AD1
A
548 553Right-handed alpha
Helix 29
AD2
A
600 609Right-handed alpha
Helix 30
AD3
A
612 622Right-handed alpha
Helix 31
AD4
A
639 647Right-handed alpha
Helix 32
AD5
A
656 664Right-handed alpha
Helix 33
AD6
A
665 687Right-handed alpha
Helix 34
AD7
A
706 715Right-handed alpha
Helix 35
AD8
A
716 719Right-handed 310
Helix 36
AD9
A
727 738Right-handed alpha
Helix 37
AE1
A
747 751Right-handed 310
Helix 38
AE2
A
759 770Right-handed alpha
Helix 39
AE3
A
770 776Right-handed alpha
Helix 40
AE4
A
861 866Right-handed alpha
Helix 41
AE5
A
888 893Right-handed alpha
Helix 42
AE6
A
893 899Right-handed alpha
Helix 43
AE7
A
940 957Right-handed alpha
Helix 44
AE8
A
964 986Right-handed alpha
Helix 45
AE9
A
1009 1025Right-handed alpha
Helix 46
AF1
A
1084 1088Right-handed 310
Helix 47
AF2
A
1090 1100Right-handed alpha
Helix 48
AF3
A
1177 1189Right-handed alpha
Helix 49
AF4
A
1199 1207Right-handed alpha
Helix 50
AF5
A
1208 1223Right-handed alpha
Helix 51
AF6
A
1250 1254Right-handed 310
Helix 52
AF7
A
1261 1284Right-handed alpha
Helix 53
AF8
A
1294 1307Right-handed alpha
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There are 11 sheets in PDB entry 5KK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
274 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 596first strand
Strand 2
A
720 725anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 994parallel
Strand 5
A
1063 1066parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
934 935first strand
Strand 2
A
938 939anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1106first strand
Strand 2
A
1113 1116anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1237anti-parallel
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