Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KKZ entry

There are 2 chains in PDB entry 5KKZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	HIS 431
B	ALA 1	TRP 217

There are156 helices in PDB entry 5KKZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed alpha
Helix 2	AA2	A	24	34	Right-handed alpha
Helix 3	AA3	A	42	45	Right-handed 310
Helix 4	AA4	A	46	67	Right-handed alpha
Helix 5	AA5	A	75	86	Right-handed alpha
Helix 6	AA6	A	89	119	Right-handed alpha
Helix 7	AA7	A	125	149	Right-handed alpha
Helix 8	AA8	A	152	168	Right-handed alpha
Helix 9	AA9	A	172	182	Right-handed alpha
Helix 10	AB1	A	187	220	Right-handed alpha
Helix 11	AB2	A	233	240	Right-handed alpha
Helix 12	AB3	A	244	270	Right-handed alpha
Helix 13	AB4	A	276	281	Right-handed 310
Helix 14	AB5	A	295	297	Right-handed 310
Helix 15	AB6	A	298	308	Right-handed alpha
Helix 16	AB7	A	312	322	Right-handed alpha
Helix 17	AB8	A	327	345	Right-handed alpha
Helix 18	AB9	A	345	350	Right-handed alpha
Helix 19	AC1	A	356	359	Right-handed 310
Helix 20	AC2	A	360	382	Right-handed alpha
Helix 21	AC3	A	388	406	Right-handed alpha
Helix 22	AC4	A	406	412	Right-handed alpha
Helix 23	AC5	A	423	430	Right-handed alpha
Helix 24	AC6	B	21	35	Right-handed alpha
Helix 25	AC7	B	36	39	Right-handed 310
Helix 26	AC8	B	46	51	Right-handed 310
Helix 27	AC9	B	59	69	Right-handed alpha
Helix 28	AD1	B	102	107	Right-handed alpha
Helix 29	AD2	B	117	124	Right-handed alpha
Helix 30	AD3	B	126	137	Right-handed alpha
Helix 31	AD4	B	143	147	Right-handed 310
Helix 32	AD5	B	166	170	Right-handed 310
Helix 33	AD6	B	203	220	Right-handed alpha
Helix 34	AD7	B	222	253	Right-handed alpha
Helix 35	AD8	C	10	37	Right-handed alpha
Helix 36	AD9	C	41	46	Right-handed alpha
Helix 37	AE1	C	78	88	Right-handed alpha
Helix 38	AE2	C	89	93	Right-handed 310
Helix 39	AE3	C	110	115	Right-handed 310
Helix 40	AE4	E	13	21	Right-handed alpha
Helix 41	AE5	E	24	34	Right-handed alpha
Helix 42	AE6	E	42	45	Right-handed 310
Helix 43	AE7	E	46	67	Right-handed alpha
Helix 44	AE8	E	75	86	Right-handed alpha
Helix 45	AE9	E	89	119	Right-handed alpha
Helix 46	AF1	E	125	149	Right-handed alpha
Helix 47	AF2	E	152	168	Right-handed alpha
Helix 48	AF3	E	172	182	Right-handed alpha
Helix 49	AF4	E	187	220	Right-handed alpha
Helix 50	AF5	E	233	240	Right-handed alpha
Helix 51	AF6	E	246	270	Right-handed alpha
Helix 52	AF7	E	276	281	Right-handed 310
Helix 53	AF8	E	295	297	Right-handed 310
Helix 54	AF9	E	298	308	Right-handed alpha
Helix 55	AG1	E	312	322	Right-handed alpha
Helix 56	AG2	E	327	345	Right-handed alpha
Helix 57	AG3	E	345	350	Right-handed alpha
Helix 58	AG4	E	356	359	Right-handed 310
Helix 59	AG5	E	360	382	Right-handed alpha
Helix 60	AG6	E	388	406	Right-handed alpha
Helix 61	AG7	E	406	412	Right-handed alpha
Helix 62	AG8	E	423	430	Right-handed alpha
Helix 63	AG9	F	21	35	Right-handed alpha
Helix 64	AH1	F	36	39	Right-handed 310
Helix 65	AH2	F	46	51	Right-handed 310
Helix 66	AH3	F	59	69	Right-handed alpha
Helix 67	AH4	F	102	107	Right-handed alpha
Helix 68	AH5	F	117	124	Right-handed alpha
Helix 69	AH6	F	126	137	Right-handed alpha
Helix 70	AH7	F	143	147	Right-handed 310
Helix 71	AH8	F	166	170	Right-handed 310
Helix 72	AH9	F	203	220	Right-handed alpha
Helix 73	AI1	F	222	253	Right-handed alpha
Helix 74	AI2	G	10	37	Right-handed alpha
Helix 75	AI3	G	41	46	Right-handed alpha
Helix 76	AI4	G	78	88	Right-handed alpha
Helix 77	AI5	G	89	93	Right-handed 310
Helix 78	AI6	G	110	115	Right-handed 310
Helix 79	AI7	K	13	21	Right-handed alpha
Helix 80	AI8	K	24	34	Right-handed alpha
Helix 81	AI9	K	42	45	Right-handed 310
Helix 82	AJ1	K	46	66	Right-handed alpha
Helix 83	AJ2	K	75	86	Right-handed alpha
Helix 84	AJ3	K	89	119	Right-handed alpha
Helix 85	AJ4	K	125	149	Right-handed alpha
Helix 86	AJ5	K	152	168	Right-handed alpha
Helix 87	AJ6	K	172	182	Right-handed alpha
Helix 88	AJ7	K	187	220	Right-handed alpha
Helix 89	AJ8	K	233	240	Right-handed alpha
Helix 90	AJ9	K	244	270	Right-handed alpha
Helix 91	AK1	K	276	281	Right-handed 310
Helix 92	AK2	K	295	297	Right-handed 310
Helix 93	AK3	K	298	308	Right-handed alpha
Helix 94	AK4	K	312	322	Right-handed alpha
Helix 95	AK5	K	327	345	Right-handed alpha
Helix 96	AK6	K	346	349	Right-handed 310
Helix 97	AK7	K	356	359	Right-handed 310
Helix 98	AK8	K	360	382	Right-handed alpha
Helix 99	AK9	K	388	406	Right-handed alpha
Helix 100	AL1	K	406	412	Right-handed alpha
Helix 101	AL2	K	423	430	Right-handed alpha
Helix 102	AL3	L	21	35	Right-handed alpha
Helix 103	AL4	L	36	39	Right-handed 310
Helix 104	AL5	L	46	51	Right-handed 310
Helix 105	AL6	L	59	69	Right-handed alpha
Helix 106	AL7	L	102	107	Right-handed alpha
Helix 107	AL8	L	117	124	Right-handed alpha
Helix 108	AL9	L	126	137	Right-handed alpha
Helix 109	AM1	L	143	147	Right-handed 310
Helix 110	AM2	L	166	170	Right-handed 310
Helix 111	AM3	L	203	220	Right-handed alpha
Helix 112	AM4	L	222	253	Right-handed alpha
Helix 113	AM5	M	10	37	Right-handed alpha
Helix 114	AM6	M	41	46	Right-handed alpha
Helix 115	AM7	M	78	88	Right-handed alpha
Helix 116	AM8	M	89	93	Right-handed 310
Helix 117	AM9	M	110	115	Right-handed 310
Helix 118	AN1	O	13	21	Right-handed alpha
Helix 119	AN2	O	24	34	Right-handed alpha
Helix 120	AN3	O	42	45	Right-handed 310
Helix 121	AN4	O	46	66	Right-handed alpha
Helix 122	AN5	O	75	86	Right-handed alpha
Helix 123	AN6	O	89	119	Right-handed alpha
Helix 124	AN7	O	125	149	Right-handed alpha
Helix 125	AN8	O	152	168	Right-handed alpha
Helix 126	AN9	O	172	182	Right-handed alpha
Helix 127	AO1	O	187	220	Right-handed alpha
Helix 128	AO2	O	233	240	Right-handed alpha
Helix 129	AO3	O	244	270	Right-handed alpha
Helix 130	AO4	O	276	281	Right-handed 310
Helix 131	AO5	O	295	297	Right-handed 310
Helix 132	AO6	O	298	308	Right-handed alpha
Helix 133	AO7	O	312	322	Right-handed alpha
Helix 134	AO8	O	327	345	Right-handed alpha
Helix 135	AO9	O	345	350	Right-handed alpha
Helix 136	AP1	O	356	359	Right-handed 310
Helix 137	AP2	O	360	382	Right-handed alpha
Helix 138	AP3	O	388	406	Right-handed alpha
Helix 139	AP4	O	406	412	Right-handed alpha
Helix 140	AP5	O	423	430	Right-handed alpha
Helix 141	AP6	P	21	35	Right-handed alpha
Helix 142	AP7	P	36	39	Right-handed 310
Helix 143	AP8	P	46	51	Right-handed 310
Helix 144	AP9	P	59	69	Right-handed alpha
Helix 145	AQ1	P	102	107	Right-handed alpha
Helix 146	AQ2	P	117	124	Right-handed alpha
Helix 147	AQ3	P	126	137	Right-handed alpha
Helix 148	AQ4	P	143	147	Right-handed 310
Helix 149	AQ5	P	166	170	Right-handed 310
Helix 150	AQ6	P	203	220	Right-handed alpha
Helix 151	AQ7	P	222	253	Right-handed alpha
Helix 152	AQ8	Q	10	37	Right-handed alpha
Helix 153	AQ9	Q	41	46	Right-handed alpha
Helix 154	AR1	Q	78	88	Right-handed alpha
Helix 155	AR2	Q	89	93	Right-handed 310
Helix 156	AR3	Q	110	115	Right-handed 310

There are 24 sheets in PDB entry 5KKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	241	243	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	80	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	181	183	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	183	186	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	122	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	146	149	anti-parallel
Strand 3	C	154	156	anti-parallel
Strand 4	C	162	164	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	38	first strand
Strand 2	E	241	243	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	80	82	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	157	first strand
Strand 2	F	181	183	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	53	first strand
Strand 2	G	183	186	anti-parallel
Strand 3	G	176	180	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	67	first strand
Strand 2	G	70	76	anti-parallel
Strand 3	G	122	126	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	141	first strand
Strand 2	G	146	149	anti-parallel
Strand 3	G	154	156	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	38	first strand
Strand 2	K	241	243	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	73	first strand
Strand 2	L	80	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	181	183	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	50	53	first strand
Strand 2	M	183	186	anti-parallel
Strand 3	M	176	180	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	61	67	first strand
Strand 2	M	70	76	anti-parallel
Strand 3	M	122	126	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	137	141	first strand
Strand 2	M	146	149	anti-parallel
Strand 3	M	154	156	anti-parallel
Strand 4	M	162	164	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	36	38	first strand
Strand 2	O	241	243	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	71	73	first strand
Strand 2	P	80	82	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	155	157	first strand
Strand 2	P	181	183	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	50	53	first strand
Strand 2	Q	183	186	anti-parallel
Strand 3	Q	176	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	61	67	first strand
Strand 2	Q	70	76	anti-parallel
Strand 3	Q	122	126	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	137	141	first strand
Strand 2	Q	146	149	anti-parallel
Strand 3	Q	154	156	anti-parallel
Strand 4	Q	162	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KKZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKZ