Analysis of interatomic Contacts of Structural Units in PDB entry:
5KN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KN8 entry

There are 3 chains in PDB entry 5KN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8MET 229
C
 A 3 T 12
D
 A 13 T 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5KN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
35 47Right-handed alpha
Helix 4
AA4
A
50 65Right-handed alpha
Helix 5
AA5
A
67 74Right-handed alpha
Helix 6
AA6
A
75 84Right-handed alpha
Helix 7
AA7
A
88 106Right-handed alpha
Helix 8
AA8
A
113 119Right-handed alpha
Helix 9
AA9
A
124 137Right-handed alpha
Helix 10
AB1
A
144 156Right-handed alpha
Helix 11
AB2
A
163 178Right-handed alpha
Helix 12
AB3
A
182 197Right-handed alpha
Helix 13
AB4
A
204 208Right-handed 310
Helix 14
AB5
A
210 213Right-handed 310
Helix 15
AB6
A
214 220Right-handed alpha
Helix 16
AB7
A
221 225Right-handed 310
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There are no sheets in PDB entry 5KN8
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il