Analysis of interatomic Contacts of Structural Units in PDB entry:
5KPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KPJ entry

There are 3 chains in PDB entry 5KPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30GLY 1071
A
 SER 1073GLY 1245
A
 VAL 1247SER 1268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5KPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
43 62Right-handed alpha
Helix 3
AA3
A
62 88Right-handed alpha
Helix 4
AA4
A
95 153Right-handed alpha
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
163 182Right-handed alpha
Helix 7
AA7
A
183 188Right-handed alpha
Helix 8
AA8
A
188 206Right-handed alpha
Helix 9
AA9
A
209 228Right-handed alpha
Helix 10
AB1
A
228 255Right-handed alpha
Helix 11
AB2
A
256 263Right-handed alpha
Helix 12
AB3
A
265 277Right-handed alpha
Helix 13
AB4
A
278 319Right-handed alpha
Helix 14
AB5
A
323 340Right-handed alpha
Helix 15
AB6
A
344 366Right-handed alpha
Helix 16
AB7
A
428 437Right-handed alpha
Helix 17
AB8
A
455 457Right-handed 310
Helix 18
AB9
A
458 465Right-handed alpha
Helix 19
AC1
A
480 486Right-handed alpha
Helix 20
AC2
A
492 503Right-handed alpha
Helix 21
AC3
A
505 511Right-handed alpha
Helix 22
AC4
A
514 517Right-handed 310
Helix 23
AC5
A
528 544Right-handed alpha
Helix 24
AC6
A
553 556Right-handed 310
Helix 25
AC7
A
558 573Right-handed alpha
Helix 26
AC8
A
584 590Right-handed alpha
Helix 27
AC9
A
607 615Right-handed alpha
Helix 28
AD1
A
616 625Right-handed alpha
Helix 29
AD2
A
692 700Right-handed alpha
Helix 30
AD3
A
701 703Right-handed 310
Helix 31
AD4
A
704 738Right-handed alpha
Helix 32
AD5
A
742 749Right-handed alpha
Helix 33
AD6
A
749 794Right-handed alpha
Helix 34
AD7
A
796 801Right-handed alpha
Helix 35
AD8
A
806 820Right-handed alpha
Helix 36
AD9
A
821 849Right-handed alpha
Helix 37
AE1
A
850 899Right-handed alpha
Helix 38
AE2
A
899 904Right-handed alpha
Helix 39
AE3
A
908 919Right-handed alpha
Helix 40
AE4
A
920 962Right-handed alpha
Helix 41
AE5
A
966 991Right-handed alpha
Helix 42
AE6
A
992 1009Right-handed alpha
Helix 43
AE7
A
1071 1080Right-handed alpha
Helix 44
AE8
A
1098 1100Right-handed 310
Helix 45
AE9
A
1101 1108Right-handed alpha
Helix 46
AF1
A
1123 1129Right-handed alpha
Helix 47
AF2
A
1137 1148Right-handed alpha
Helix 48
AF3
A
1150 1157Right-handed alpha
Helix 49
AF4
A
1159 1162Right-handed 310
Helix 50
AF5
A
1173 1189Right-handed alpha
Helix 51
AF6
A
1203 1219Right-handed alpha
Helix 52
AF7
A
1231 1236Right-handed 310
Helix 53
AF8
A
1252 1259Right-handed alpha
Helix 54
AF9
A
1261 1268Right-handed alpha
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There are 6 sheets in PDB entry 5KPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 413first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
446 449anti-parallel
Strand 4
A
452 453anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
418 422parallel
Strand 5
A
593 598parallel
Strand 6
A
601 606anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
519 520anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1056first strand
Strand 2
A
1031 1038anti-parallel
Strand 3
A
1087 1092anti-parallel
Strand 4
A
1095 1096anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1112first strand
Strand 2
A
1192 1196parallel
Strand 3
A
1222 1226parallel
Strand 4
A
1061 1066parallel
Strand 5
A
1238 1243parallel
Strand 6
A
1246 1251anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1121 1122first strand
Strand 2
A
1164 1165anti-parallel
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