Analysis of interatomic Contacts of Structural Units in PDB entry:
5KRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KRE entry

There is 1 chain in PDB entry 5KRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLY 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5KRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 46Right-handed alpha
Helix 2
AA2
A
67 70Right-handed 310
Helix 3
AA3
A
90 111Right-handed alpha
Helix 4
AA4
A
114 116Right-handed 310
Helix 5
AA5
A
124 137Right-handed alpha
Helix 6
AA6
A
155 163Right-handed alpha
Helix 7
AA7
A
183 197Right-handed alpha
Helix 8
AA8
A
214 229Right-handed alpha
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There are 2 sheets in PDB entry 5KRE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
22 27parallel
Strand 4
A
118 123parallel
Strand 5
A
143 147parallel
Strand 6
A
171 176parallel
Strand 7
A
201 206parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
73 75anti-parallel
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