Analysis of interatomic Contacts of Structural Units in PDB entry:
5KTE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KTE entry

There are 3 chains in PDB entry 5KTE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 43	TYR 428
H	GLN 1	PRO 213
L	ASP 1	GLU 213

There are 25 helices in PDB entry 5KTE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	55	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	65	70	Right-handed alpha
Helix 4	AA4	A	71	73	Right-handed 310
Helix 5	AA5	A	74	94	Right-handed alpha
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	112	145	Right-handed alpha
Helix 8	AA8	A	149	164	Right-handed alpha
Helix 9	AA9	A	177	191	Right-handed alpha
Helix 10	AB1	A	203	208	Right-handed alpha
Helix 11	AB2	A	214	229	Right-handed alpha
Helix 12	AB3	A	230	235	Right-handed alpha
Helix 13	AB4	A	260	286	Right-handed alpha
Helix 14	AB5	A	293	297	Right-handed 310
Helix 15	AB6	A	311	340	Right-handed alpha
Helix 16	AB7	A	353	357	Right-handed 310
Helix 17	AB8	A	358	366	Right-handed 310
Helix 18	AB9	A	369	371	Right-handed 310
Helix 19	AC1	A	372	384	Right-handed alpha
Helix 20	AC2	A	385	396	Right-handed alpha
Helix 21	AC3	A	407	426	Right-handed alpha
Helix 22	AC4	H	28	32	Right-handed 310
Helix 23	AC5	H	201	204	Right-handed 310
Helix 24	AC6	L	121	127	Right-handed alpha
Helix 25	AC7	L	182	188	Right-handed alpha

There are 10 sheets in PDB entry 5KTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	108	112	parallel
Strand 3	H	91	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	137	146	anti-parallel
Strand 3	H	175	184	anti-parallel
Strand 4	H	165	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	137	146	anti-parallel
Strand 3	H	175	184	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	156	first strand
Strand 2	H	195	199	anti-parallel
Strand 3	H	206	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	134	139	anti-parallel
Strand 3	L	173	179	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KTE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KTE