Analysis of interatomic Contacts of Structural Units in PDB entry:
5KZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KZW entry

There is 1 chain in PDB entry 5KZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 79CYS 952
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KZW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
99 106Right-handed alpha
Helix 4
AA4
A
235 237Right-handed 310
Helix 5
AA5
A
346 359Right-handed alpha
Helix 6
AA6
A
365 370Right-handed 310
Helix 7
AA7
A
380 394Right-handed alpha
Helix 8
AA8
A
404 408Right-handed 310
Helix 9
AA9
A
423 434Right-handed alpha
Helix 10
AB1
A
455 465Right-handed alpha
Helix 11
AB2
A
492 510Right-handed alpha
Helix 12
AB3
A
567 572Right-handed alpha
Helix 13
AB4
A
574 592Right-handed alpha
Helix 14
AB5
A
605 609Right-handed 310
Helix 15
AB6
A
620 637Right-handed alpha
Helix 16
AB7
A
654 666Right-handed alpha
Helix 17
AB8
A
683 687Right-handed 310
Helix 18
AB9
A
688 720Right-handed alpha
Helix 19
AC1
A
726 731Right-handed alpha
Helix 20
AC2
A
734 738Right-handed 310
Helix 21
AC3
A
776 778Right-handed 310
Helix 22
AC4
A
832 837Right-handed alpha
Helix 23
AC5
A
866 871Right-handed alpha
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There are 9 sheets in PDB entry 5KZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 110first strand
Strand 2
A
127 128anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 143first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
178 184anti-parallel
Strand 5
A
337 342anti-parallel
Strand 6
A
307 312anti-parallel
Strand 7
A
297 301anti-parallel
Strand 8
A
257 259anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
209 214first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
230 233anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 242first strand
Strand 2
A
245 251anti-parallel
Strand 3
A
327 332anti-parallel
Strand 4
A
318 323anti-parallel
Strand 5
A
274 278anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
642 643first strand
Strand 2
A
611 613parallel
Strand 3
A
597 599parallel
Strand 4
A
515 517parallel
Strand 5
A
437 442parallel
Strand 6
A
400 403parallel
Strand 7
A
372 373parallel
Strand 8
A
672 673parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
446 447first strand
Strand 2
A
483 486anti-parallel
Strand 3
A
477 480anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
724 725first strand
Strand 2
A
744 746anti-parallel
Strand 3
A
750 753anti-parallel
Strand 4
A
815 819anti-parallel
Strand 5
A
770 774anti-parallel
Strand 6
A
797 800anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
762 767first strand
Strand 2
A
803 808anti-parallel
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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
921 922first strand
Strand 2
A
916 918anti-parallel
Strand 3
A
948 951anti-parallel
Strand 4
A
884 891anti-parallel
Strand 5
A
874 881anti-parallel
Strand 6
A
853 859anti-parallel
Strand 7
A
822 827parallel
Strand 8
A
841 846anti-parallel
Strand 9
A
900 907parallel
Strand 10
A
934 942anti-parallel
Strand 11
A
925 929anti-parallel
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