Analysis of interatomic Contacts of Structural Units in PDB entry:
5L0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L0R entry

There are 2 chains in PDB entry 5L0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30PRO 385
B
 ASP 452THR 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5L0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 46Right-handed alpha
Helix 2
AA2
A
53 56Right-handed 310
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
67 69Right-handed 310
Helix 5
AA5
A
73 83Right-handed alpha
Helix 6
AA6
A
104 119Right-handed alpha
Helix 7
AA7
A
120 122Right-handed 310
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
183 198Right-handed alpha
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
215 217Right-handed 310
Helix 12
AB3
A
218 228Right-handed alpha
Helix 13
AB4
A
244 249Right-handed 310
Helix 14
AB5
A
258 263Right-handed 310
Helix 15
AB6
A
278 286Right-handed alpha
Helix 16
AB7
A
301 305Right-handed 310
Helix 17
AB8
A
320 331Right-handed alpha
Helix 18
AB9
A
331 350Right-handed alpha
Helix 19
AC1
A
351 368Right-handed alpha
Helix 20
AC2
B
454 459Right-handed 310
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There are 6 sheets in PDB entry 5L0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
95 98anti-parallel
Strand 4
A
381 383anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
159 160parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
232 236parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
289 293parallel
Strand 3
A
312 314parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 470first strand
Strand 2
B
473 477anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 483first strand
Strand 2
B
489 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il