Analysis of interatomic Contacts of Structural Units in PDB entry:
5L1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L1I entry

There are 4 chains in PDB entry 5L1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2SER 432
T
 C 1 T 3
T
 A 5 T 12
P
 A 1 C 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5L1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
51 56Right-handed alpha
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
89 105Right-handed alpha
Helix 7
AA7
A
121 132Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
162 177Right-handed alpha
Helix 10
AB1
A
185 209Right-handed alpha
Helix 11
AB2
A
219 230Right-handed alpha
Helix 12
AB3
A
239 241Right-handed 310
Helix 13
AB4
A
242 249Right-handed alpha
Helix 14
AB5
A
251 255Right-handed 310
Helix 15
AB6
A
260 271Right-handed alpha
Helix 16
AB7
A
274 281Right-handed 310
Helix 17
AB8
A
282 291Right-handed alpha
Helix 18
AB9
A
291 302Right-handed alpha
Helix 19
AC1
A
326 330Right-handed 310
Helix 20
AC2
A
334 360Right-handed alpha
Helix 21
AC3
A
391 402Right-handed alpha
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There are 4 sheets in PDB entry 5L1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
116 120anti-parallel
Strand 3
A
9 14anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
235 237parallel
Strand 6
A
145 147parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
76 79parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 324first strand
Strand 2
A
421 431anti-parallel
Strand 3
A
361 371anti-parallel
Strand 4
A
381 386anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
414 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il