Analysis of interatomic Contacts of Structural Units in PDB entry:
5L46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5L46 entry

There are 2 chains in PDB entry 5L46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 46	ARG 854
B	LYS 47	ARG 854

There are 58 helices in PDB entry 5L46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	71	Right-handed alpha
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	104	124	Right-handed alpha
Helix 4	AA4	A	140	155	Right-handed alpha
Helix 5	AA5	A	165	171	Right-handed alpha
Helix 6	AA6	A	194	209	Right-handed alpha
Helix 7	AA7	A	248	250	Right-handed 310
Helix 8	AA8	A	251	257	Right-handed alpha
Helix 9	AA9	A	258	260	Right-handed 310
Helix 10	AB1	A	278	284	Right-handed alpha
Helix 11	AB2	A	322	327	Right-handed alpha
Helix 12	AB3	A	341	344	Right-handed 310
Helix 13	AB4	A	345	356	Right-handed alpha
Helix 14	AB5	A	357	361	Right-handed 310
Helix 15	AB6	A	399	416	Right-handed alpha
Helix 16	AB7	A	437	451	Right-handed alpha
Helix 17	AB8	A	452	454	Right-handed 310
Helix 18	AB9	A	473	479	Right-handed alpha
Helix 19	AC1	A	514	528	Right-handed alpha
Helix 20	AC2	A	546	555	Right-handed alpha
Helix 21	AC3	A	596	598	Right-handed 310
Helix 22	AC4	A	599	614	Right-handed alpha
Helix 23	AC5	A	636	643	Right-handed alpha
Helix 24	AC6	A	689	703	Right-handed alpha
Helix 25	AC7	A	711	723	Right-handed alpha
Helix 26	AC8	A	742	746	Right-handed 310
Helix 27	AC9	A	756	767	Right-handed alpha
Helix 28	AD1	A	821	823	Right-handed 310
Helix 29	AD2	B	58	71	Right-handed alpha
Helix 30	AD3	B	88	92	Right-handed 310
Helix 31	AD4	B	104	118	Right-handed alpha
Helix 32	AD5	B	118	124	Right-handed alpha
Helix 33	AD6	B	140	155	Right-handed alpha
Helix 34	AD7	B	165	173	Right-handed alpha
Helix 35	AD8	B	194	208	Right-handed alpha
Helix 36	AD9	B	248	250	Right-handed 310
Helix 37	AE1	B	251	257	Right-handed alpha
Helix 38	AE2	B	258	260	Right-handed 310
Helix 39	AE3	B	278	283	Right-handed alpha
Helix 40	AE4	B	322	327	Right-handed alpha
Helix 41	AE5	B	341	344	Right-handed 310
Helix 42	AE6	B	345	356	Right-handed alpha
Helix 43	AE7	B	357	361	Right-handed 310
Helix 44	AE8	B	399	416	Right-handed alpha
Helix 45	AE9	B	424	432	Right-handed 310
Helix 46	AF1	B	437	451	Right-handed alpha
Helix 47	AF2	B	452	454	Right-handed 310
Helix 48	AF3	B	474	479	Right-handed alpha
Helix 49	AF4	B	514	528	Right-handed alpha
Helix 50	AF5	B	546	555	Right-handed alpha
Helix 51	AF6	B	599	614	Right-handed alpha
Helix 52	AF7	B	636	643	Right-handed alpha
Helix 53	AF8	B	690	702	Right-handed alpha
Helix 54	AF9	B	703	705	Right-handed 310
Helix 55	AG1	B	711	722	Right-handed alpha
Helix 56	AG2	B	742	746	Right-handed 310
Helix 57	AG3	B	756	767	Right-handed alpha
Helix 58	AG4	B	821	823	Right-handed 310

There are 19 sheets in PDB entry 5L46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	76	79	parallel
Strand 3	A	49	55	parallel
Strand 4	A	238	246	parallel
Strand 5	A	230	233	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	76	79	parallel
Strand 3	A	49	55	parallel
Strand 4	A	238	246	parallel
Strand 5	A	391	395	parallel
Strand 6	A	381	384	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	191	192	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	134	138	anti-parallel
Strand 4	A	290	293	parallel
Strand 5	A	298	303	anti-parallel
Strand 6	A	306	311	anti-parallel
Strand 7	A	266	275	anti-parallel
Strand 8	A	364	374	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	487	first strand
Strand 2	A	490	496	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	681	687	anti-parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	659	664	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	681	687	anti-parallel
Strand 3	A	630	633	anti-parallel
Strand 4	A	530	533	anti-parallel
Strand 5	A	708	709	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	571	first strand
Strand 2	A	577	585	anti-parallel
Strand 3	A	591	595	anti-parallel
Strand 4	A	538	543	anti-parallel
Strand 5	A	619	622	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	777	first strand
Strand 2	A	811	819	anti-parallel
Strand 3	A	795	806	anti-parallel
Strand 4	A	789	792	anti-parallel
Strand 5	A	828	833	anti-parallel
Strand 6	A	836	842	anti-parallel
Strand 7	A	770	777	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	76	79	parallel
Strand 3	B	49	55	parallel
Strand 4	B	237	246	parallel
Strand 5	B	230	234	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	76	79	parallel
Strand 3	B	49	55	parallel
Strand 4	B	237	246	parallel
Strand 5	B	391	395	parallel
Strand 6	B	381	384	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	191	192	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	134	138	anti-parallel
Strand 4	B	290	293	parallel
Strand 5	B	298	303	anti-parallel
Strand 6	B	306	311	anti-parallel
Strand 7	B	266	275	anti-parallel
Strand 8	B	319	320	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	134	138	anti-parallel
Strand 4	B	290	293	parallel
Strand 5	B	298	303	anti-parallel
Strand 6	B	306	311	anti-parallel
Strand 7	B	266	275	anti-parallel
Strand 8	B	364	374	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	487	first strand
Strand 2	B	490	496	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	628	first strand
Strand 2	B	681	687	anti-parallel
Strand 3	B	667	673	anti-parallel
Strand 4	B	659	664	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	628	first strand
Strand 2	B	681	687	anti-parallel
Strand 3	B	630	633	anti-parallel
Strand 4	B	530	533	anti-parallel
Strand 5	B	708	709	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	571	first strand
Strand 2	B	577	587	anti-parallel
Strand 3	B	590	595	anti-parallel
Strand 4	B	538	543	anti-parallel
Strand 5	B	619	622	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	770	777	first strand
Strand 2	B	811	819	anti-parallel
Strand 3	B	795	806	anti-parallel
Strand 4	B	789	792	anti-parallel
Strand 5	B	828	833	anti-parallel
Strand 6	B	836	842	anti-parallel
Strand 7	B	770	777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5L46

Analysis of interatomic Contacts of Structural Units in PDB entry:
5L46