Analysis of interatomic Contacts of Structural Units in PDB entry:
5L4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5L4N entry

There are 8 chains in PDB entry 5L4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5THR 275
A
 VAL 277ALA 288
B
 THR 5THR 275
B
 VAL 277ALA 288
C
 THR 5THR 275
C
 VAL 277ALA 288
D
 THR 5THR 275
D
 VAL 277ALA 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5L4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
84 101Right-handed alpha
Helix 4
AA4
A
136 148Right-handed alpha
Helix 5
AA5
A
148 165Right-handed alpha
Helix 6
AA6
A
166 170Right-handed 310
Helix 7
AA7
A
191 213Right-handed alpha
Helix 8
AA8
A
240 245Right-handed 310
Helix 9
AA9
A
253 266Right-handed alpha
Helix 10
AB1
A
267 270Right-handed 310
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
B
16 29Right-handed alpha
Helix 13
AB4
B
40 55Right-handed alpha
Helix 14
AB5
B
84 101Right-handed alpha
Helix 15
AB6
B
135 148Right-handed alpha
Helix 16
AB7
B
148 165Right-handed alpha
Helix 17
AB8
B
166 170Right-handed 310
Helix 18
AB9
B
191 213Right-handed alpha
Helix 19
AC1
B
241 245Right-handed 310
Helix 20
AC2
B
253 266Right-handed alpha
Helix 21
AC3
B
267 270Right-handed 310
Helix 22
AC4
B
282 286Right-handed 310
Helix 23
AC5
C
16 28Right-handed alpha
Helix 24
AC6
C
40 55Right-handed alpha
Helix 25
AC7
C
84 101Right-handed alpha
Helix 26
AC8
C
134 148Right-handed alpha
Helix 27
AC9
C
148 165Right-handed alpha
Helix 28
AD1
C
166 170Right-handed 310
Helix 29
AD2
C
191 213Right-handed alpha
Helix 30
AD3
C
234 244Right-handed alpha
Helix 31
AD4
C
253 266Right-handed alpha
Helix 32
AD5
C
267 270Right-handed 310
Helix 33
AD6
C
282 286Right-handed 310
Helix 34
AD7
D
16 29Right-handed alpha
Helix 35
AD8
D
40 55Right-handed alpha
Helix 36
AD9
D
84 101Right-handed alpha
Helix 37
AE1
D
134 148Right-handed alpha
Helix 38
AE2
D
148 165Right-handed alpha
Helix 39
AE3
D
166 170Right-handed 310
Helix 40
AE4
D
191 213Right-handed alpha
Helix 41
AE5
D
234 243Right-handed alpha
Helix 42
AE6
D
254 266Right-handed alpha
Helix 43
AE7
D
267 270Right-handed 310
Helix 44
AE8
D
282 286Right-handed 310
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There are 4 sheets in PDB entry 5L4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
105 108parallel
Strand 5
A
174 179parallel
Strand 6
A
217 224parallel
Strand 7
A
276 279parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
105 108parallel
Strand 5
B
174 179parallel
Strand 6
B
217 224parallel
Strand 7
B
276 279parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
105 108parallel
Strand 5
C
174 179parallel
Strand 6
C
217 224parallel
Strand 7
C
276 279parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
105 108parallel
Strand 5
D
174 179parallel
Strand 6
D
217 224parallel
Strand 7
D
276 279parallel
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