Analysis of interatomic Contacts of Structural Units in PDB entry:
5LF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LF8 entry

There is 1 chain in PDB entry 5LF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5LF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
69 75Right-handed alpha
Helix 3
AA3
A
134 148Right-handed alpha
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
193 200Right-handed alpha
Helix 6
AA6
A
215 224Right-handed alpha
Helix 7
AA7
A
261 265Right-handed alpha
Helix 8
AA8
A
279 293Right-handed alpha
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There are 3 sheets in PDB entry 5LF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
6 8anti-parallel
Strand 3
A
47 50parallel
Strand 4
A
34 41anti-parallel
Strand 5
A
59 64anti-parallel
Strand 6
A
156 168parallel
Strand 7
A
179 190anti-parallel
Strand 8
A
92 100parallel
Strand 9
A
126 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 214first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
121 123anti-parallel
Strand 4
A
277 278parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
259 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il