Analysis of interatomic Contacts of Structural Units in PDB entry:
5LGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LGD entry

There are 2 chains in PDB entry 5LGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 35VAL 434
B
 GLU 576PRO 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5LGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed alpha
Helix 2
AA2
A
48 56Right-handed alpha
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
124 127Right-handed 310
Helix 5
AA5
A
139 149Right-handed alpha
Helix 6
AA6
A
151 165Right-handed alpha
Helix 7
AA7
A
175 181Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
220 224Right-handed 310
Helix 10
AB1
A
240 245Right-handed 310
Helix 11
AB2
A
296 301Right-handed 310
Helix 12
AB3
A
306 313Right-handed 310
Helix 13
AB4
A
331 334Right-handed 310
Helix 14
AB5
A
344 347Right-handed 310
Helix 15
AB6
A
350 355Right-handed alpha
Helix 16
AB7
A
363 368Right-handed alpha
Helix 17
AB8
A
399 403Right-handed 310
Helix 18
AB9
A
423 434Right-handed alpha
Helix 19
AC1
B
581 605Right-handed alpha
Helix 20
AC2
B
619 646Right-handed alpha
Helix 21
AC3
B
656 666Right-handed alpha
Helix 22
AC4
B
666 679Right-handed alpha
Helix 23
AC5
B
680 694Right-handed alpha
Helix 24
AC6
B
718 738Right-handed alpha
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There are 5 sheets in PDB entry 5LGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
83 95anti-parallel
Strand 3
A
61 70anti-parallel
Strand 4
A
409 421anti-parallel
Strand 5
A
380 393anti-parallel
Strand 6
A
339 342anti-parallel
Strand 7
A
327 329anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
273 285anti-parallel
Strand 3
A
288 294anti-parallel
Strand 4
A
370 373anti-parallel
Strand 5
A
380 393anti-parallel
Strand 6
A
409 421anti-parallel
Strand 7
A
61 70anti-parallel
Strand 8
A
83 95anti-parallel
Strand 9
A
357 358parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
208 215anti-parallel
Strand 4
A
227 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
170 174anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
197 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il