Analysis of interatomic Contacts of Structural Units in PDB entry:
5LKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LKD entry

There are 2 chains in PDB entry 5LKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLU 372
B
 GLN 16LEU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5LKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 59Right-handed alpha
Helix 2
AA2
A
95 99Right-handed alpha
Helix 3
AA3
A
105 110Right-handed 310
Helix 4
AA4
A
140 149Right-handed alpha
Helix 5
AA5
A
173 183Right-handed alpha
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
191 197Right-handed alpha
Helix 8
AA8
A
201 203Right-handed 310
Helix 9
AA9
A
204 219Right-handed alpha
Helix 10
AB1
A
221 228Right-handed alpha
Helix 11
AB2
A
231 265Right-handed alpha
Helix 12
AB3
A
268 274Right-handed alpha
Helix 13
AB4
A
284 298Right-handed alpha
Helix 14
AB5
A
300 305Right-handed alpha
Helix 15
AB6
A
311 316Right-handed alpha
Helix 16
AB7
A
316 330Right-handed alpha
Helix 17
AB8
A
330 335Right-handed alpha
Helix 18
AB9
A
338 350Right-handed alpha
Helix 19
AC1
B
46 59Right-handed alpha
Helix 20
AC2
B
140 149Right-handed alpha
Helix 21
AC3
B
173 183Right-handed alpha
Helix 22
AC4
B
186 190Right-handed 310
Helix 23
AC5
B
191 197Right-handed alpha
Helix 24
AC6
B
201 203Right-handed 310
Helix 25
AC7
B
204 219Right-handed alpha
Helix 26
AC8
B
221 228Right-handed alpha
Helix 27
AC9
B
231 265Right-handed alpha
Helix 28
AD1
B
268 274Right-handed alpha
Helix 29
AD2
B
284 298Right-handed alpha
Helix 30
AD3
B
300 305Right-handed alpha
Helix 31
AD4
B
311 316Right-handed alpha
Helix 32
AD5
B
316 330Right-handed alpha
Helix 33
AD6
B
330 335Right-handed alpha
Helix 34
AD7
B
338 350Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5LKD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
38 42parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
168 171anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
38 42parallel
Strand 3
B
160 163anti-parallel
Strand 4
B
168 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il