Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LQF entry

There are 6 chains in PDB entry 5LQF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU -2	ASP 289
B	SER 167	VAL 430
C	MET 1	PRO 74
D	LEU -2	ASP 289
E	SER 167	VAL 430
F	MET 1	LEU 46

There are 65 helices in PDB entry 5LQF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	2	Right-handed 310
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	45	58	Right-handed alpha
Helix 4	AA4	A	87	93	Right-handed alpha
Helix 5	AA5	A	101	121	Right-handed alpha
Helix 6	AA6	A	130	132	Right-handed 310
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	183	200	Right-handed alpha
Helix 9	AA9	A	208	221	Right-handed alpha
Helix 10	AB1	A	230	234	Right-handed 310
Helix 11	AB2	A	248	252	Right-handed 310
Helix 12	AB3	A	257	268	Right-handed alpha
Helix 13	AB4	A	277	282	Right-handed alpha
Helix 14	AB5	A	283	289	Right-handed 310
Helix 15	AB6	B	170	185	Right-handed alpha
Helix 16	AB7	B	198	217	Right-handed alpha
Helix 17	AB8	B	219	235	Right-handed alpha
Helix 18	AB9	B	240	242	Right-handed 310
Helix 19	AC1	B	243	260	Right-handed alpha
Helix 20	AC2	B	265	273	Right-handed alpha
Helix 21	AC3	B	278	293	Right-handed alpha
Helix 22	AC4	B	301	313	Right-handed alpha
Helix 23	AC5	B	316	331	Right-handed alpha
Helix 24	AC6	B	332	337	Right-handed 310
Helix 25	AC7	B	340	357	Right-handed alpha
Helix 26	AC8	B	362	370	Right-handed alpha
Helix 27	AC9	B	372	392	Right-handed alpha
Helix 28	AD1	B	398	404	Right-handed alpha
Helix 29	AD2	B	405	410	Right-handed 310
Helix 30	AD3	B	411	419	Right-handed 310
Helix 31	AD4	B	420	429	Right-handed alpha
Helix 32	AD5	C	25	30	Right-handed alpha
Helix 33	AD6	C	39	46	Right-handed alpha
Helix 34	AD7	D	0	2	Right-handed 310
Helix 35	AD8	D	45	58	Right-handed alpha
Helix 36	AD9	D	87	94	Right-handed alpha
Helix 37	AE1	D	101	121	Right-handed alpha
Helix 38	AE2	D	130	132	Right-handed 310
Helix 39	AE3	D	171	176	Right-handed alpha
Helix 40	AE4	D	183	200	Right-handed alpha
Helix 41	AE5	D	208	221	Right-handed alpha
Helix 42	AE6	D	230	234	Right-handed 310
Helix 43	AE7	D	248	252	Right-handed 310
Helix 44	AE8	D	257	268	Right-handed alpha
Helix 45	AE9	D	277	282	Right-handed alpha
Helix 46	AF1	D	283	289	Right-handed 310
Helix 47	AF2	E	170	185	Right-handed alpha
Helix 48	AF3	E	198	217	Right-handed alpha
Helix 49	AF4	E	219	237	Right-handed alpha
Helix 50	AF5	E	240	242	Right-handed 310
Helix 51	AF6	E	243	260	Right-handed alpha
Helix 52	AF7	E	265	272	Right-handed alpha
Helix 53	AF8	E	278	293	Right-handed alpha
Helix 54	AF9	E	301	313	Right-handed alpha
Helix 55	AG1	E	316	330	Right-handed alpha
Helix 56	AG2	E	331	337	Right-handed 310
Helix 57	AG3	E	340	356	Right-handed alpha
Helix 58	AG4	E	362	370	Right-handed alpha
Helix 59	AG5	E	372	392	Right-handed alpha
Helix 60	AG6	E	398	404	Right-handed alpha
Helix 61	AG7	E	405	410	Right-handed 310
Helix 62	AG8	E	411	419	Right-handed 310
Helix 63	AG9	E	420	429	Right-handed alpha
Helix 64	AH1	F	25	30	Right-handed alpha
Helix 65	AH2	F	39	46	Right-handed alpha

There are 10 sheets in PDB entry 5LQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	29	34	anti-parallel
Strand 4	A	75	81	anti-parallel
Strand 5	A	66	72	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	134	136	anti-parallel
Strand 3	A	142	144	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	151	152	anti-parallel
Strand 3	A	155	156	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	12	13	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	66	72	anti-parallel
Strand 4	C	55	59	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	12	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	29	34	anti-parallel
Strand 4	D	75	81	anti-parallel
Strand 5	D	66	72	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	134	136	anti-parallel
Strand 3	D	142	144	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	151	152	anti-parallel
Strand 3	D	155	156	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	12	13	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	66	72	anti-parallel
Strand 4	F	55	58	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LQF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LQF