Analysis of interatomic Contacts of Structural Units in PDB entry:
5LRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LRK entry

There are 6 chains in PDB entry 5LRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6LEU 308
B
 GLY 6LEU 308
C
 GLY 6LEU 308
F
 PHE 6PHE 6
G
 PHE 6PHE 6
H
 PHE 6PHE 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5LRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
93 103Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
142 146Right-handed 310
Helix 6
AA6
A
173 185Right-handed alpha
Helix 7
AA7
A
215 232Right-handed alpha
Helix 8
AA8
A
243 247Right-handed alpha
Helix 9
AA9
A
253 261Right-handed alpha
Helix 10
AB1
A
282 284Right-handed 310
Helix 11
AB2
A
285 306Right-handed alpha
Helix 12
AB3
B
14 29Right-handed alpha
Helix 13
AB4
B
72 90Right-handed alpha
Helix 14
AB5
B
93 103Right-handed alpha
Helix 15
AB6
B
112 122Right-handed alpha
Helix 16
AB7
B
142 146Right-handed 310
Helix 17
AB8
B
173 186Right-handed alpha
Helix 18
AB9
B
215 235Right-handed alpha
Helix 19
AC1
B
243 247Right-handed alpha
Helix 20
AC2
B
253 261Right-handed alpha
Helix 21
AC3
B
282 284Right-handed 310
Helix 22
AC4
B
285 306Right-handed alpha
Helix 23
AC5
C
14 28Right-handed alpha
Helix 24
AC6
C
72 90Right-handed alpha
Helix 25
AC7
C
93 103Right-handed alpha
Helix 26
AC8
C
112 122Right-handed alpha
Helix 27
AC9
C
142 146Right-handed 310
Helix 28
AD1
C
173 185Right-handed alpha
Helix 29
AD2
C
215 232Right-handed alpha
Helix 30
AD3
C
243 247Right-handed alpha
Helix 31
AD4
C
253 261Right-handed alpha
Helix 32
AD5
C
282 284Right-handed 310
Helix 33
AD6
C
285 306Right-handed alpha
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There are 3 sheets in PDB entry 5LRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
104 108anti-parallel
Strand 4
A
61 65parallel
Strand 5
A
189 196parallel
Strand 6
A
265 270parallel
Strand 7
A
201 204anti-parallel
Strand 8
A
239 242parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 40first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
104 108anti-parallel
Strand 4
B
61 66parallel
Strand 5
B
189 196parallel
Strand 6
B
265 270parallel
Strand 7
B
201 204anti-parallel
Strand 8
B
239 242parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 40first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
104 108anti-parallel
Strand 4
C
61 66parallel
Strand 5
C
189 196parallel
Strand 6
C
265 270parallel
Strand 7
C
201 204anti-parallel
Strand 8
C
239 242parallel
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