Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LTU entry

There are 2 chains in PDB entry 5LTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 9GLY 146
B
GLN 8CYS 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5LTU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
58 72Right-handed alpha
Helix 2
AA2
A
122 133Right-handed alpha
Helix 3
AA3
A
133 146Right-handed alpha
Helix 4
AA4
B
58 72Right-handed alpha
Helix 5
AA5
B
122 130Right-handed alpha
Helix 6
AA6
B
133 146Right-handed alpha
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There are 4 sheets in PDB entry 5LTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 52first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
91 103parallel
Strand 4
A
73 86anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
117 121anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
50 52first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
91 103parallel
Strand 4
B
73 86anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 47first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
117 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il