Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWY entry

There are 3 chains in PDB entry 5LWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU -1GLU 382
H
GLU 1ALA 119
L
ASP 1ASN 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5LWY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
107 111Right-handed 310
Helix 2
AA2
A
112 116Right-handed 310
Helix 3
AA3
A
131 138Right-handed alpha
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
145 168Right-handed alpha
Helix 6
AA6
A
170 174Right-handed 310
Helix 7
AA7
A
176 204Right-handed alpha
Helix 8
AA8
A
208 239Right-handed alpha
Helix 9
AA9
A
242 264Right-handed alpha
Helix 10
AB1
A
271 273Right-handed 310
Helix 11
AB2
A
274 288Right-handed alpha
Helix 12
AB3
A
289 301Right-handed alpha
Helix 13
AB4
A
301 308Right-handed alpha
Helix 14
AB5
A
309 331Right-handed alpha
Helix 15
AB6
A
346 377Right-handed alpha
Helix 16
AB7
H
28 32Right-handed 310
Helix 17
AB8
H
62 65Right-handed 310
Helix 18
AB9
H
87 91Right-handed 310
Helix 19
AC1
L
79 83Right-handed 310
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There are 6 sheets in PDB entry 5LWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
107 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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