Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M3H entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 5M3H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 714
B	MET 1	LYS 754
C	SER -1	SER 742
R	U 1	U 13
V	A 1	G 16
X	TYR 1	THR 4
X	PRO 6	PRO 6
Y	PRO 13	THR 18
Y	PRO 20	TYR 22

There are 98 helices in PDB entry 5M3H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	10	19	Right-handed alpha
Helix 3	AA3	A	36	50	Right-handed alpha
Helix 4	AA4	A	83	98	Right-handed alpha
Helix 5	AA5	A	127	135	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	179	Right-handed alpha
Helix 8	AA8	A	180	185	Right-handed alpha
Helix 9	AA9	A	208	218	Right-handed alpha
Helix 10	AB1	A	225	236	Right-handed alpha
Helix 11	AB2	A	240	249	Right-handed alpha
Helix 12	AB3	A	302	312	Right-handed alpha
Helix 13	AB4	A	330	347	Right-handed alpha
Helix 14	AB5	A	358	365	Right-handed alpha
Helix 15	AB6	A	375	380	Right-handed alpha
Helix 16	AB7	A	399	410	Right-handed alpha
Helix 17	AB8	A	428	447	Right-handed alpha
Helix 18	AB9	A	448	471	Right-handed alpha
Helix 19	AC1	A	524	533	Right-handed 310
Helix 20	AC2	A	567	575	Right-handed alpha
Helix 21	AC3	A	578	599	Right-handed alpha
Helix 22	AC4	A	602	609	Right-handed alpha
Helix 23	AC5	A	627	645	Right-handed alpha
Helix 24	AC6	A	647	669	Right-handed alpha
Helix 25	AC7	A	677	687	Right-handed alpha
Helix 26	AC8	A	692	714	Right-handed alpha
Helix 27	AC9	B	5	11	Right-handed 310
Helix 28	AD1	B	14	22	Right-handed 310
Helix 29	AD2	B	35	50	Right-handed alpha
Helix 30	AD3	B	84	99	Right-handed alpha
Helix 31	AD4	B	101	117	Right-handed alpha
Helix 32	AD5	B	118	123	Right-handed 310
Helix 33	AD6	B	138	153	Right-handed alpha
Helix 34	AD7	B	156	161	Right-handed 310
Helix 35	AD8	B	162	173	Right-handed alpha
Helix 36	AD9	B	174	176	Right-handed 310
Helix 37	AE1	B	213	222	Right-handed alpha
Helix 38	AE2	B	245	264	Right-handed alpha
Helix 39	AE3	B	274	292	Right-handed alpha
Helix 40	AE4	B	314	326	Right-handed alpha
Helix 41	AE5	B	330	338	Right-handed alpha
Helix 42	AE6	B	338	346	Right-handed alpha
Helix 43	AE7	B	370	374	Right-handed 310
Helix 44	AE8	B	382	395	Right-handed alpha
Helix 45	AE9	B	414	426	Right-handed alpha
Helix 46	AF1	B	428	433	Right-handed alpha
Helix 47	AF2	B	455	472	Right-handed alpha
Helix 48	AF3	B	505	512	Right-handed 310
Helix 49	AF4	B	518	537	Right-handed alpha
Helix 50	AF5	B	540	559	Right-handed alpha
Helix 51	AF6	B	572	583	Right-handed alpha
Helix 52	AF7	B	585	589	Right-handed 310
Helix 53	AF8	B	590	594	Right-handed 310
Helix 54	AF9	B	600	604	Right-handed 310
Helix 55	AG1	B	607	613	Right-handed alpha
Helix 56	AG2	B	614	616	Right-handed 310
Helix 57	AG3	B	617	625	Right-handed alpha
Helix 58	AG4	B	636	640	Right-handed 310
Helix 59	AG5	B	672	680	Right-handed 310
Helix 60	AG6	B	681	700	Right-handed alpha
Helix 61	AG7	B	701	705	Right-handed 310
Helix 62	AG8	B	713	732	Right-handed alpha
Helix 63	AG9	B	736	753	Right-handed alpha
Helix 64	AH1	C	0	13	Right-handed alpha
Helix 65	AH2	C	13	23	Right-handed alpha
Helix 66	AH3	C	24	33	Right-handed alpha
Helix 67	AH4	C	42	51	Right-handed alpha
Helix 68	AH5	C	62	67	Right-handed alpha
Helix 69	AH6	C	92	103	Right-handed alpha
Helix 70	AH7	C	110	115	Right-handed alpha
Helix 71	AH8	C	115	127	Right-handed alpha
Helix 72	AH9	C	155	168	Right-handed alpha
Helix 73	AI1	C	169	172	Right-handed 310
Helix 74	AI2	C	179	193	Right-handed alpha
Helix 75	AI3	C	199	212	Right-handed alpha
Helix 76	AI4	C	225	230	Right-handed alpha
Helix 77	AI5	C	231	236	Right-handed alpha
Helix 78	AI6	C	251	272	Right-handed alpha
Helix 79	AI7	C	275	287	Right-handed alpha
Helix 80	AI8	C	294	301	Right-handed alpha
Helix 81	AI9	C	305	315	Right-handed alpha
Helix 82	AJ1	C	390	405	Right-handed alpha
Helix 83	AJ2	C	407	413	Right-handed alpha
Helix 84	AJ3	C	429	441	Right-handed alpha
Helix 85	AJ4	C	442	450	Right-handed alpha
Helix 86	AJ5	C	514	518	Right-handed 310
Helix 87	AJ6	C	541	556	Right-handed alpha
Helix 88	AJ7	C	556	566	Right-handed alpha
Helix 89	AJ8	C	567	573	Right-handed alpha
Helix 90	AJ9	C	574	576	Right-handed 310
Helix 91	AK1	C	577	583	Right-handed alpha
Helix 92	AK2	C	584	586	Right-handed 310
Helix 93	AK3	C	587	606	Right-handed alpha
Helix 94	AK4	C	611	619	Right-handed alpha
Helix 95	AK5	C	620	623	Right-handed 310
Helix 96	AK6	C	676	680	Right-handed 310
Helix 97	AK7	C	701	705	Right-handed 310
Helix 98	AK8	C	709	716	Right-handed 310

There are 25 sheets in PDB entry 5M3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	144	147	parallel
Strand 4	A	155	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	674	675	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	436	443	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	475	486	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	324	first strand
Strand 2	A	536	546	anti-parallel
Strand 3	A	551	566	anti-parallel
Strand 4	A	512	521	anti-parallel
Strand 5	A	491	501	anti-parallel
Strand 6	A	475	486	anti-parallel
Strand 7	A	415	416	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	A	386	387	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	193	first strand
Strand 2	B	198	212	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	653	656	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	215	220	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	288	289	anti-parallel
Strand 3	C	529	530	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	325	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	361	366	anti-parallel
Strand 4	C	370	377	anti-parallel
Strand 5	C	380	388	anti-parallel
Strand 6	C	478	480	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	345	first strand
Strand 2	C	351	358	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	473	475	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	463	first strand
Strand 2	C	469	470	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	640	first strand
Strand 2	C	643	648	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	671	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	721	727	anti-parallel
Strand 4	C	707	708	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M3H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M3H