Analysis of interatomic Contacts of Structural Units in PDB entry:
5M6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M6U entry

There are 2 chains in PDB entry 5M6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 17TRP 1027
B
 VAL 436GLY 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5M6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 66Right-handed 310
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
107 122Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 157Right-handed alpha
Helix 8
AA8
A
158 167Right-handed alpha
Helix 9
AA9
A
212 219Right-handed alpha
Helix 10
AB1
A
255 258Right-handed 310
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
279 288Right-handed alpha
Helix 13
AB4
A
382 384Right-handed 310
Helix 14
AB5
A
487 498Right-handed alpha
Helix 15
AB6
A
504 517Right-handed alpha
Helix 16
AB7
A
524 534Right-handed alpha
Helix 17
AB8
A
534 542Right-handed alpha
Helix 18
AB9
A
545 553Right-handed alpha
Helix 19
AC1
A
557 570Right-handed alpha
Helix 20
AC2
A
575 583Right-handed alpha
Helix 21
AC3
A
589 601Right-handed alpha
Helix 22
AC4
A
604 620Right-handed alpha
Helix 23
AC5
A
627 640Right-handed alpha
Helix 24
AC6
A
640 653Right-handed alpha
Helix 25
AC7
A
657 674Right-handed alpha
Helix 26
AC8
A
675 704Right-handed alpha
Helix 27
AC9
A
707 720Right-handed alpha
Helix 28
AD1
A
721 729Right-handed alpha
Helix 29
AD2
A
784 804Right-handed alpha
Helix 30
AD3
A
834 839Right-handed alpha
Helix 31
AD4
A
854 862Right-handed alpha
Helix 32
AD5
A
866 890Right-handed alpha
Helix 33
AD6
A
935 943Right-handed alpha
Helix 34
AD7
A
949 970Right-handed alpha
Helix 35
AD8
A
970 981Right-handed alpha
Helix 36
AD9
A
982 985Right-handed 310
Helix 37
AE1
A
991 1002Right-handed alpha
Helix 38
AE2
A
1007 1027Right-handed alpha
Helix 39
AE3
B
441 512Right-handed alpha
Helix 40
AE4
B
518 587Right-handed alpha
Helix 41
AE5
B
590 599Right-handed alpha
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There are 9 sheets in PDB entry 5M6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 103parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
79 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
274 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 380first strand
Strand 2
A
322 331anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
435 440anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
363 364anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
340 349anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
416 424anti-parallel
Strand 5
A
442 443anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
740 741anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
750 751anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
759 764anti-parallel
Strand 3
A
775 780anti-parallel
Strand 4
A
822 826anti-parallel
Strand 5
A
815 819anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
899 902anti-parallel
Strand 3
A
907 909anti-parallel
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