Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M8Q entry

There are 4 chains in PDB entry 5M8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	SER 470
B	GLN 25	SER 470
C	GLN 25	SER 470
D	GLN 25	SER 470

There are 76 helices in PDB entry 5M8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	32	39	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	133	136	Right-handed 310
Helix 5	AA5	A	137	154	Right-handed alpha
Helix 6	AA6	A	165	169	Right-handed 310
Helix 7	AA7	A	184	195	Right-handed alpha
Helix 8	AA8	A	218	239	Right-handed alpha
Helix 9	AA9	A	281	285	Right-handed 310
Helix 10	AB1	A	292	300	Right-handed alpha
Helix 11	AB2	A	321	325	Right-handed 310
Helix 12	AB3	A	329	337	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	375	384	Right-handed alpha
Helix 15	AB6	A	386	390	Right-handed 310
Helix 16	AB7	A	393	397	Right-handed 310
Helix 17	AB8	A	398	418	Right-handed alpha
Helix 18	AB9	A	421	425	Right-handed 310
Helix 19	AC1	A	448	453	Right-handed 310
Helix 20	AC2	A	455	461	Right-handed alpha
Helix 21	AC3	B	27	31	Right-handed 310
Helix 22	AC4	B	32	38	Right-handed alpha
Helix 23	AC5	B	54	58	Right-handed 310
Helix 24	AC6	B	133	136	Right-handed 310
Helix 25	AC7	B	137	154	Right-handed alpha
Helix 26	AC8	B	183	197	Right-handed alpha
Helix 27	AC9	B	218	239	Right-handed alpha
Helix 28	AD1	B	281	285	Right-handed 310
Helix 29	AD2	B	292	300	Right-handed alpha
Helix 30	AD3	B	329	334	Right-handed alpha
Helix 31	AD4	B	354	361	Right-handed alpha
Helix 32	AD5	B	375	384	Right-handed alpha
Helix 33	AD6	B	385	390	Right-handed 310
Helix 34	AD7	B	393	397	Right-handed 310
Helix 35	AD8	B	398	418	Right-handed alpha
Helix 36	AD9	B	421	425	Right-handed 310
Helix 37	AE1	B	448	453	Right-handed alpha
Helix 38	AE2	B	455	460	Right-handed alpha
Helix 39	AE3	C	27	31	Right-handed 310
Helix 40	AE4	C	32	39	Right-handed alpha
Helix 41	AE5	C	54	58	Right-handed 310
Helix 42	AE6	C	137	154	Right-handed alpha
Helix 43	AE7	C	165	169	Right-handed 310
Helix 44	AE8	C	183	197	Right-handed alpha
Helix 45	AE9	C	218	240	Right-handed alpha
Helix 46	AF1	C	281	285	Right-handed 310
Helix 47	AF2	C	292	300	Right-handed alpha
Helix 48	AF3	C	321	326	Right-handed 310
Helix 49	AF4	C	329	337	Right-handed alpha
Helix 50	AF5	C	354	361	Right-handed alpha
Helix 51	AF6	C	375	384	Right-handed alpha
Helix 52	AF7	C	385	390	Right-handed 310
Helix 53	AF8	C	393	397	Right-handed 310
Helix 54	AF9	C	398	418	Right-handed alpha
Helix 55	AG1	C	421	425	Right-handed 310
Helix 56	AG2	C	448	453	Right-handed alpha
Helix 57	AG3	C	455	460	Right-handed alpha
Helix 58	AG4	D	27	31	Right-handed 310
Helix 59	AG5	D	32	39	Right-handed alpha
Helix 60	AG6	D	54	58	Right-handed 310
Helix 61	AG7	D	132	136	Right-handed 310
Helix 62	AG8	D	137	154	Right-handed alpha
Helix 63	AG9	D	165	169	Right-handed 310
Helix 64	AH1	D	184	195	Right-handed alpha
Helix 65	AH2	D	218	240	Right-handed alpha
Helix 66	AH3	D	281	286	Right-handed 310
Helix 67	AH4	D	292	300	Right-handed alpha
Helix 68	AH5	D	321	325	Right-handed 310
Helix 69	AH6	D	329	337	Right-handed alpha
Helix 70	AH7	D	354	361	Right-handed alpha
Helix 71	AH8	D	375	384	Right-handed alpha
Helix 72	AH9	D	386	390	Right-handed 310
Helix 73	AI1	D	393	397	Right-handed 310
Helix 74	AI2	D	398	418	Right-handed alpha
Helix 75	AI3	D	448	453	Right-handed alpha
Helix 76	AI4	D	455	460	Right-handed alpha

There are 22 sheets in PDB entry 5M8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	179	183	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	97	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	124	125	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	462	465	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	273	277	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	100	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	112	113	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	462	465	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	179	180	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	97	101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	112	113	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	462	464	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	179	180	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	273	277	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	97	101	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	112	113	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	124	125	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	462	464	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	162	first strand
Strand 2	D	179	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M8Q