Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MGX entry

There are 8 chains in PDB entry 5MGX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 702	ASP 709
B	ASP 702	ASP 709
C	GLU 704	ASP 709
D	GLU 704	GLU 707
E	GLU 92	GLN 356
F	GLU 91	ALA 355
G	GLU 91	GLN 356
H	GLU 91	GLN 356

There are 44 helices in PDB entry 5MGX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	153	160	Right-handed alpha
Helix 2	AA2	E	161	163	Right-handed 310
Helix 3	AA3	E	175	178	Right-handed 310
Helix 4	AA4	E	208	212	Right-handed 310
Helix 5	AA5	E	213	234	Right-handed alpha
Helix 6	AA6	E	236	253	Right-handed alpha
Helix 7	AA7	E	260	285	Right-handed alpha
Helix 8	AA8	E	287	302	Right-handed alpha
Helix 9	AA9	E	305	320	Right-handed alpha
Helix 10	AB1	E	321	336	Right-handed alpha
Helix 11	AB2	E	339	355	Right-handed alpha
Helix 12	AB3	F	153	160	Right-handed alpha
Helix 13	AB4	F	161	163	Right-handed 310
Helix 14	AB5	F	175	178	Right-handed 310
Helix 15	AB6	F	208	212	Right-handed 310
Helix 16	AB7	F	213	234	Right-handed alpha
Helix 17	AB8	F	236	253	Right-handed alpha
Helix 18	AB9	F	260	285	Right-handed alpha
Helix 19	AC1	F	287	302	Right-handed alpha
Helix 20	AC2	F	305	320	Right-handed alpha
Helix 21	AC3	F	321	334	Right-handed alpha
Helix 22	AC4	F	339	353	Right-handed alpha
Helix 23	AC5	G	153	160	Right-handed alpha
Helix 24	AC6	G	161	163	Right-handed 310
Helix 25	AC7	G	175	178	Right-handed 310
Helix 26	AC8	G	208	212	Right-handed 310
Helix 27	AC9	G	213	234	Right-handed alpha
Helix 28	AD1	G	236	253	Right-handed alpha
Helix 29	AD2	G	260	285	Right-handed alpha
Helix 30	AD3	G	287	302	Right-handed alpha
Helix 31	AD4	G	305	319	Right-handed alpha
Helix 32	AD5	G	321	336	Right-handed alpha
Helix 33	AD6	G	339	356	Right-handed alpha
Helix 34	AD7	H	153	160	Right-handed alpha
Helix 35	AD8	H	161	163	Right-handed 310
Helix 36	AD9	H	175	178	Right-handed 310
Helix 37	AE1	H	208	212	Right-handed 310
Helix 38	AE2	H	213	234	Right-handed alpha
Helix 39	AE3	H	236	253	Right-handed alpha
Helix 40	AE4	H	260	285	Right-handed alpha
Helix 41	AE5	H	287	302	Right-handed alpha
Helix 42	AE6	H	305	320	Right-handed alpha
Helix 43	AE7	H	321	336	Right-handed alpha
Helix 44	AE8	H	339	354	Right-handed alpha

There are 4 sheets in PDB entry 5MGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	102	108	anti-parallel
Strand 3	E	168	173	anti-parallel
Strand 4	E	194	204	anti-parallel
Strand 5	E	122	131	anti-parallel
Strand 6	E	142	146	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	102	108	anti-parallel
Strand 3	F	168	173	anti-parallel
Strand 4	F	194	204	anti-parallel
Strand 5	F	122	131	anti-parallel
Strand 6	F	136	146	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	102	108	anti-parallel
Strand 3	G	168	173	anti-parallel
Strand 4	G	194	204	anti-parallel
Strand 5	G	122	131	anti-parallel
Strand 6	G	136	146	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	95	first strand
Strand 2	H	102	108	anti-parallel
Strand 3	H	168	173	anti-parallel
Strand 4	H	194	204	anti-parallel
Strand 5	H	122	131	anti-parallel
Strand 6	H	142	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MGX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGX