Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MMB entry

There are 4 chains in PDB entry 5MMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 9GLN 375
B
ASP 116GLU 297
C
A 1 A 19
D
T 1 A 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MMB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
68 78Right-handed alpha
Helix 4
AA4
A
84 94Right-handed alpha
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
162 174Right-handed alpha
Helix 7
AA7
A
187 192Right-handed alpha
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
213 216Right-handed 310
Helix 10
AB1
A
217 235Right-handed alpha
Helix 11
AB2
A
242 244Right-handed 310
Helix 12
AB3
A
245 255Right-handed alpha
Helix 13
AB4
A
264 271Right-handed alpha
Helix 14
AB5
A
287 301Right-handed alpha
Helix 15
AB6
B
162 174Right-handed alpha
Helix 16
AB7
B
187 192Right-handed alpha
Helix 17
AB8
B
192 202Right-handed alpha
Helix 18
AB9
B
217 236Right-handed alpha
Helix 19
AC1
B
241 255Right-handed alpha
Helix 20
AC2
B
264 271Right-handed alpha
Helix 21
AC3
B
287 297Right-handed alpha
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There are 5 sheets in PDB entry 5MMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
44 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
314 315parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 158first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
181 184parallel
Strand 5
A
205 208parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 365first strand
Strand 2
A
351 355anti-parallel
Strand 3
A
341 348anti-parallel
Strand 4
A
322 325anti-parallel
Strand 5
A
369 371anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 158first strand
Strand 2
B
141 147anti-parallel
Strand 3
B
124 130anti-parallel
Strand 4
B
181 184parallel
Strand 5
B
205 208parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il