Analysis of interatomic Contacts of Structural Units in PDB entry:
5MR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MR4 entry

There are 4 chains in PDB entry 5MR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 100VAL 197
B
ALA 100VAL 197
C
PRO 36THR 359
D
PRO 37THR 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5MR4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
113 116Right-handed 310
Helix 2
AA2
A
139 151Right-handed alpha
Helix 3
AA3
B
113 116Right-handed 310
Helix 4
AA4
B
139 151Right-handed alpha
Helix 5
AA5
C
39 49Right-handed alpha
Helix 6
AA6
C
50 65Right-handed alpha
Helix 7
AA7
C
76 87Right-handed alpha
Helix 8
AA8
C
101 112Right-handed alpha
Helix 9
AA9
C
159 170Right-handed alpha
Helix 10
AB1
C
171 187Right-handed alpha
Helix 11
AB2
C
196 211Right-handed alpha
Helix 12
AB3
C
212 221Right-handed alpha
Helix 13
AB4
C
226 235Right-handed alpha
Helix 14
AB5
C
238 243Right-handed alpha
Helix 15
AB6
C
250 260Right-handed alpha
Helix 16
AB7
C
261 276Right-handed alpha
Helix 17
AB8
C
285 288Right-handed 310
Helix 18
AB9
C
289 299Right-handed alpha
Helix 19
AC1
C
328 330Right-handed 310
Helix 20
AC2
C
331 344Right-handed alpha
Helix 21
AC3
C
345 358Right-handed alpha
Helix 22
AC4
D
39 50Right-handed alpha
Helix 23
AC5
D
50 64Right-handed alpha
Helix 24
AC6
D
77 87Right-handed alpha
Helix 25
AC7
D
88 93Right-handed 310
Helix 26
AC8
D
101 113Right-handed alpha
Helix 27
AC9
D
159 170Right-handed alpha
Helix 28
AD1
D
171 187Right-handed alpha
Helix 29
AD2
D
196 211Right-handed alpha
Helix 30
AD3
D
212 221Right-handed alpha
Helix 31
AD4
D
226 236Right-handed alpha
Helix 32
AD5
D
238 243Right-handed alpha
Helix 33
AD6
D
250 261Right-handed alpha
Helix 34
AD7
D
261 276Right-handed alpha
Helix 35
AD8
D
285 288Right-handed 310
Helix 36
AD9
D
289 299Right-handed alpha
Helix 37
AE1
D
331 344Right-handed alpha
Helix 38
AE2
D
345 358Right-handed alpha
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There are 8 sheets in PDB entry 5MR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
104 111first strand
Strand 2
A
124 131anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 170first strand
Strand 2
A
191 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 177first strand
Strand 2
A
183 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 111first strand
Strand 2
B
124 131anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
165 170first strand
Strand 2
B
191 196anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 177first strand
Strand 2
B
183 187anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
308 309first strand
Strand 2
C
319 320anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
307 309first strand
Strand 2
D
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il