Analysis of interatomic Contacts of Structural Units in PDB entry:
5MR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MR7 entry

There are 2 chains in PDB entry 5MR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 247VAL 485
B
THR 247ASP 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5MR7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
309 323Right-handed alpha
Helix 2
AA2
A
337 342Right-handed alpha
Helix 3
AA3
A
419 430Right-handed alpha
Helix 4
AA4
B
309 323Right-handed alpha
Helix 5
AA5
B
337 342Right-handed alpha
Helix 6
AA6
B
419 432Right-handed alpha
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There are 6 sheets in PDB entry 5MR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
332 334first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
248 253anti-parallel
Strand 5
A
465 467anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
267 271first strand
Strand 2
A
407 416parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
295 304anti-parallel
Strand 5
A
354 360anti-parallel
Strand 6
A
344 351anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
267 271first strand
Strand 2
A
407 416parallel
Strand 3
A
469 470anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
332 334first strand
Strand 2
B
365 371anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
248 253anti-parallel
Strand 5
B
465 467anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
267 271first strand
Strand 2
B
407 416parallel
Strand 3
B
389 397anti-parallel
Strand 4
B
295 304anti-parallel
Strand 5
B
354 360anti-parallel
Strand 6
B
344 351anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
267 271first strand
Strand 2
B
407 416parallel
Strand 3
B
469 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il