Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MV9 entry

There are 2 chains in PDB entry 5MV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1707SER 2206
B
 TYR 433PHE 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5MV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1714 1722Right-handed alpha
Helix 2
AA2
A
1757 1761Right-handed 310
Helix 3
AA3
A
1763 1781Right-handed alpha
Helix 4
AA4
A
1793 1806Right-handed alpha
Helix 5
AA5
A
1807 1822Right-handed alpha
Helix 6
AA6
A
1826 1842Right-handed alpha
Helix 7
AA7
A
1850 1860Right-handed alpha
Helix 8
AA8
A
1866 1881Right-handed alpha
Helix 9
AA9
A
1888 1897Right-handed alpha
Helix 10
AB1
A
1923 1935Right-handed alpha
Helix 11
AB2
A
1961 1976Right-handed alpha
Helix 12
AB3
A
2006 2013Right-handed alpha
Helix 13
AB4
A
2013 2025Right-handed alpha
Helix 14
AB5
A
2030 2047Right-handed alpha
Helix 15
AB6
A
2052 2058Right-handed 310
Helix 16
AB7
A
2059 2064Right-handed alpha
Helix 17
AB8
A
2068 2072Right-handed 310
Helix 18
AB9
A
2073 2086Right-handed alpha
Helix 19
AC1
A
2087 2089Right-handed 310
Helix 20
AC2
A
2092 2105Right-handed alpha
Helix 21
AC3
A
2153 2155Right-handed 310
Helix 22
AC4
A
2186 2205Right-handed alpha
Helix 23
AC5
B
489 494Right-handed alpha
Helix 24
AC6
B
514 528Right-handed alpha
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There are 5 sheets in PDB entry 5MV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1902 1908first strand
Strand 2
A
1912 1918anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1953 1955first strand
Strand 2
A
1943 1949anti-parallel
Strand 3
A
1989 1995anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2148 2152first strand
Strand 2
A
2137 2141anti-parallel
Strand 3
A
2128 2134anti-parallel
Strand 4
A
2113 2119anti-parallel
Strand 5
A
2179 2183anti-parallel
Strand 6
A
2166 2171anti-parallel
Strand 7
A
2157 2162anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 458first strand
Strand 2
B
533 538anti-parallel
Strand 3
B
501 505anti-parallel
Strand 4
B
478 484anti-parallel
Strand 5
B
466 471anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 458first strand
Strand 2
B
533 538anti-parallel
Strand 3
B
501 505anti-parallel
Strand 4
B
508 509anti-parallel
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