Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5N5T entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 5N5T
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY -4 | THR 231 |
P
|
SER 87 | HIS 88 |
P
|
SER 90 | LEU 94 |
Back to top of page
There are 11
helices in PDB entry 5N5T. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 2 |
16 | Right-handed alpha |
Helix 2 |
AA2 | A
| 18 |
31 | Right-handed alpha |
Helix 3 |
AA3 | A
| 37 |
70 | Right-handed alpha |
Helix 4 |
AA4 | A
| 79 |
105 | Right-handed alpha |
Helix 5 |
AA5 | A
| 106 |
111 | Right-handed alpha |
Helix 6 |
AA6 | A
| 113 |
135 | Right-handed alpha |
Helix 7 |
AA7 | A
| 140 |
162 | Right-handed alpha |
Helix 8 |
AA8 | A
| 166 |
183 | Right-handed alpha |
Helix 9 |
AA9 | A
| 186 |
203 | Right-handed alpha |
Helix 10 |
AB1 | A
| 204 |
208 | Right-handed 310 |
Helix 11 |
AB2 | A
| 209 |
231 | Right-handed alpha |
Back to top of page
There are no sheets in PDB entry
5N5T
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il